Absolute quantification of viable bacteria abundances in food by next-generation sequencing : quantitative NGS of viable microbesKallastu, Aili; Malv, Esther; Aro, Valter; Meikas, Anne; Vendelin, Mariann; Kattel, Anna; Nahku, Ranno; Kazantseva, JekaterinaCurrent Research in Food Science2023 / art. 100443 https://doi.org/10.1016/j.crfs.2023.100443 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rateMaser, Andres; Peebo, Karl; Vilu, Raivo; Nahku, RannoResearch in microbiology2020 / p. 185−193 https://doi.org/10.1016/j.resmic.2020.02.001 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growthMaser, Andres; Peebo, Karl; Nahku, RannoMicrobiology2019 / p. 37-46 : ill https://doi.org/10.1099/mic.0.000742 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Co-culture process development using individual substratesKattel, Anna; Morell, Indrek; Aro, Valter; Nahku, Ranno; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 28 Comparison and applications of label-free absolute proteome quantification methods on Escherichia coliArike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of proteomics2012 / p. 5437-5448 : ill https://pubmed.ncbi.nlm.nih.gov/22771841/ Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coliPeebo, Karl; Valgepea, Kaspar; Nahku, Ranno; Riis, Gethe; Õun, Mikk; Adamberg, Kaarel; Vilu, RaivoApplied microbiology and biotechnology2014 / p. 5131-5143 : ill Detailed analysis of metabolism reveals growth-rate-promoting interactions between Anaerostipes caccae and Bacteroides sppKattel, Anna; Morell, Indrek; Aro, Valter; Lahtvee, Petri-Jaan; Vilu, Raivo; Jõers, Arvi; Nahku, RannoAnaerobe2023 / art. 102680 https://doi.org/10.1016/j.anaerobe.2022.102680 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Development of consortia bioprocesses for efficient production of probioticsNahku, Ranno; Aro, Valter; Kattel, Anna; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 42 Evaluating the effect of different fibers on a simplified gut microbiotaAro, Valter; Kattel, Anna; Nahku, Ranno; Viiard, Ene; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 19 https://tftak.eu/foodbalt/assets/files/Foodbalt_Book_of_Abstracs.pdf Exploring the resilience and stability of a defined human gut microbiota consortium : an isothermal microcalorimetric studyKattel, Anna; Aro, Valter; Lahtvee, Petri-Jaan; Kazantseva, Jekaterina; Jõers, Arvi; Nahku, Ranno; Belouah, IsmaMicrobiologyOpen2024 / art. e1430 https://doi.org/10.1002/mbo3.1430 Identification and relative quantification of proteins in Escherichia coli proteome by “up-front” collision-induced dissociationArike, Liisa; Nahku, Ranno; Borissova, Maria; Adamberg, Kaarel; Vilu, RaivoEuropean journal of mass spectrometry2010 / 2, p. 227-235 https://pubmed.ncbi.nlm.nih.gov/20212332/ Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth ratesLahtvee, Petri-Jaan; Adamberg, Kaarel; Arike, Liisa; Nahku, Ranno; Aller, Kadri; Vilu, RaivoMicrobial cell factories2011 / Article no. 12 Proteome reallocation in Escherichia coli with increasing specific growth ratePeebo, Karl; Valgepea, Kaspar; Maser, Andres; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoMolecular biosystems2015 / p. 1184-1193 : ill http://dx.doi.org/10.1039/c4mb00721b The quantitative measurement of peptidoglycan components obtained from acidic hydrolysis in gram-positive and gram-negative bacteria via hydrophilic interaction liquid chromatography coupled with mass spectrometryPismennõi, Dmitri; Kattel, Anna; Belouah, Isma; Nahku, Ranno; Vilu, Raivo; Kobrin, Eeva-GerdaMicroorganisms2023 / art. 2134, 13 p. : ill https://doi.org/10.3390/microorganisms11092134 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Specific growth rate dependent transcriptiome profiling of Escherichia coli K12 MG1655 in accelerostat culturesNahku, Ranno; Valgepea, Kaspar; Lahtvee, Petri-Jaan; Erm, Sten; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoJournal of biotechnology2010 / 1, p. 60-65 https://www.sciencedirect.com/science/article/pii/S0168165609004726 Steady state growth space study of Lactococcus lactis in D-stat culturesLahtvee, Petri-Jaan; Valgepea, Kaspar; Nahku, Ranno; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoAntonie van Leeuwenhoek2009 / 4, p. 487-496 https://pubmed.ncbi.nlm.nih.gov/19603284/ Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous cultureNahku, Ranno; Peebo, Karl; Valgepea, Kaspar; Barrick, Jeffrey E.; Adamberg, Kaarel; Vilu, RaivoMicrobiology2011 / p. 2604-2610 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352173/ Systems biology approach reveals that overflow metabolism of acetate in Escheria coli is triggered by carbon catabolite repression of acetyl-CoA synthetaseValgepea, Kaspar; Adamberg, Kaarel; Nahku, Ranno; Lahtvee, Petri-Jaan; Arike, Liisa; Vilu, RaivoBMC systems biology2010 / p. 166 https://pubmed.ncbi.nlm.nih.gov/21122111/ Validation of critical factors for the quantitative characterization of bacterial physiology in accelerostat cultures = Kriitiliste faktorite valideerimine bakterite füsioloogia uurimiseks akselerostaatsetes kultiveerimiseksperimentidesNahku, Ranno2012