Analysis of soil sample metagenome as an additional tool for forensicsAaspõllu, Anu; Lilje, Liisa; Simm, Jaak; Kägo, Esta; Sipp Kulli, Sirli; Moora, Mari; Zobel, Martin; Metsis, MadisIAFS 2011 - 19th International Association of Forensic Sciences : 12. - 17.09.2011, Madeira, Portugal2011 / p. 42

Bitcoin - odav ja kiire küberrahaSimm, JaakArvutimaailm2011 / 9, lk. 50-51 : ill

Can microbes on skin help linking persons and crimes?Aaspõllu, Anu; Lillsaar, Triin; Tummeleht, Lea; Simm, Jaak; Metsis, MadisForensic science international : genetics supplement series2011 / 1, p. e269-e270 : ill http://dx.doi.org/doi:10.1016/j.fsigss.2011.08.131

Changes in the transcriptome of the human endometrial Ishikawa cancer cell line induced by estrogen, progesterone, tamoxifen, and mifepristone (RU486) as detected by RNA-sequencingTamm-Rosenstein, Karin; Simm, Jaak; Suhorutšenko, Marina; Salumets, Andres; Metsis, MadisPLoS ONE2013 / p. 1-13 : ill https://doi.org/10.1371/journal.pone.0068907 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Characterization of the vaginal micro- and mycobiome in asymptomatic reproductive-age Estonian womenDrell, Tiina; Lillsaar, Triin; Tummleht, Lea; Simm, Jaak; Aaspõllu, Anu; Väin, Edda; Saarma, Ivo; Salumets, Andres; Donders, Gilbert G. G.; Metsis, MadisPLoS ONE2013 / p. 1-11 : ill https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0054379 https://doi.org/10.1371/journal.pone.0054379 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Computationally efficient multi-task learning with least-squares probabilistic classifiersSimm, Jaak; Sugiyama, Masashi; Kato, TsuyoshiIPSJ transactions on computer vision and applications2011 / Feb., [8] p. : ill https://www.researchgate.net/publication/215704981_Computationally_Efficient_Multi-task_Learning_with_Least-Squares_Probabilistic_Classifiers

Differences in gut microbiota between atopic and healthy childrenDrell, Tiina; Larionova, Anneli; Voor, Tiia; Simm, Jaak; Julge, Kaja; Heilman, Kaire; Tillmann, Vallo; Štšepetova, Jelena; Sepp, EppCurrent Microbiology2015 / p. 177-183 https://doi.org/10.1007/s00284-015-0815-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Diversity and stability of lactic acid bacteria in rye sourdoughs of four bakeries with different propagation parametersViiard, Ene; Bessmeltseva, Marianna; Simm, Jaak; Talve, Tiina; Aaspõllu, Anu; Paalme, Toomas; Sarand, IngaPLoS ONE2016 / art. e0148325 https://doi.org/10.1371/journal.pone.0148325 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transferAltmäe, Signe; Tamm-Rosenstein, Karin; Esteban, Francisco J.; Simm, Jaak; Kolberg, Liis; Peterson, Hedi; Metsis, MadisReproductive BioMedicine Online2016 / p. 597 - 613 https://doi.org/10.1016/j.rbmo.2016.03.004 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Evolution of bacterial consortia in spontaneously started rye sourdoughs during two months of daily propagationBessmeltseva, Marjanna; Viiard, Ene; Simm, Jaak; Paalme, Toomas; Sarand, IngaPLoS ONE2014 / p. 1-12 : ill https://doi.org/10.1371/journal.pone.0095449 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Genes regulated by estrogen and progesterone in human endometrium = Östradiooli ja progesterooni reguleeritud geenid inimese endomeetriumisRosenstein, Karin2016 https://www.ester.ee/record=b4567260*est

High-throughput sequencing approach uncovers the miRNome of peritoneal endometriotic lesions and adjacent healthy tissuesSaare, Merli; Rekker, Kadri; Laisk-Podar, Triin; Sõritsa, Deniss; Roost, Anne Mari; Simm, Jaak; Velthut-Meikas, Agne; Samuel, Külli; Metsalu, Tauno; Karro, HellePLoS ONE2014 / art. e112630, 9 p. : ill https://doi.org/10.1371/journal.pone.0112630 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Improving the accuracy of least-squares probabilistic classifiersYamada, Makoto; Sugiyama, Masashi; Wichern, Gordon; Simm, JaakIEICE technical reports2010 / p. 45-50 http://www.ms.k.u-tokyo.ac.jp/sugi/2011/LSPCnew.pdf

Multi-task learning with least-squares probabilistic classifiersSimm, Jaak; Sugiyama, Masashi; Kato, TsuyoshiIEICE technical reports2010 / p. 51-56 https://www.ieice.org/publications/ken/summary.php?contribution_id=KJ00006872689&society_cd=ISS&ken_id=PRMU&year=2010&presen_date=2010/8/29&schedule_id=AN10541106_110(187)&lang=en&expandable=3

Near-bottom hypoxia impacts dynamics of bacterioplankton assemblage throughoutwater column of the Gulf of Finland (Baltic Sea)Laas, Peeter; Šatova, Elina; Lips, Inga; Lips, Urmas; Simm, Jaak; Kisand, Veljo; Metsis, MadisPLoS ONE2016 / art. e0156147, p. 1-19 : ill https://doi.org/10.1371/journal.pone.0156147 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Redox-specialized bacterioplankton metacommunity in a temperate estuaryLaas, Peeter; Simm, Jaak; Lips, Inga; Lips, Urmas; Kisand, Veljo; Metsis, MadisPLoS ONE2015 / art. e0122304 https://doi.org/10.1371/journal.pone.0122304 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Research resource : small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genesVelthut, Agne; Simm, Jaak; Tuuri, Timo; Tapanainen, Juha S.; Metsis, Madis; Salumets, AndresMolecular endocrinology2013 / p. 1128-1141 : ill https://doi.org/10.1210/me.2013-1058 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Soil sample metagenome NGS data management for forensic investigationLilje, Liisa; Lillsaar, Triin; Rätsep, Ranno; Simm, Jaak; Aaspõllu, AnuForensic science international : genetics supplement series2013 / p. e35-e36 : ill https://doi.org/10.1016/j.fsigss.2013.10.017 Journal metrics at Scopus Article at Scopus

Spatial variability of winter bacterioplankton community composition in the Gulf of Finland (the Baltic Sea)Laas, Peeter; Simm, Jaak; Lips, Inga; Metsis, MadisJournal of marine systems2014 / p. 127-134 : ill https://doi.org/10.1016/j.jmarsys.2013.07.016 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

The complex microbiome from native semen to embryo culture environment in human in vitro fertilization procedureŠtšepetova, Jelena; Baranova, Juliana; Simm, Jaak; Parm, ÜlleReproductive biology and endocrinology2020 / art. 3, 13 p. : ill https://doi.org/10.1186/s12958-019-0562-z Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencingDrell, Tiina; Lutsar, Irja; Štšepetova, Jelena; Parm, Ülle; Metsvaht, Tuuli; Ilmoja, Mari-Liis; Simm, Jaak; Sepp, EppGut Microbes2014 / p. 304-503 : ill https://doi.org/10.4161/gmic.28849 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

The infuence of diferent maternal microbial communities on the development of infant gut and oral microbiotaDrell, Tiina; Štšepetova, Jelena; Simm, Jaak; Rull, Kristiina; Aleksejeva, Aira; Antson, Anne; Tillmann, Vallo; Metsis, Madis; Sepp, Epp; Salumets, Andres; Mändar, ReetScientific reports2017 / art. 9940, p. 1-9 : ill https://doi.org/10.1038/s41598-017-09278-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

The potential role of dioxin analogues in prostate cancer and male infertility - preliminary study using LNCaP cell lineSuhorutšenko, Marina; Tamm-Rosenstein, Karin; Simm, Jaak; Salumets, Andres; Metsis, MadisHuman reproduction2013 / p. i310-i311

The tissue specific role of estrogen and progesterone in human endometrium and mammary glandTamm, Karin; Suhorutšenko, Marina; Rõõm, Miia; Simm, Jaak; Metsis, MadisSteroids : basic science2012 / p. 35-64 : ill https://eestiarst.ee/en/the-tissue-specific-role-of-oestrogen-and-progesterone-in-human-endometrium-and-mammary-gland/

Tree-based ensemble multi-task learning method for classification and regressionSimm, Jaak; Magrans De Abril, Ildefons; Sugiyma, MasashiIEICE transactions on information and systems2014 / p. 1677-1681 https://doi.org/10.1587/transinf.E97.D.1677 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Tree-based ensemble multi-task learning method for classification and regressionSimm, Jaak; de Abril, Ildefons Magrans; Sugiyma, MasashiNew directions in transfer and multi-task : learning across domains and tasks2013 / [5] p. : ill

TTÜ teadusarvutuste klasterSimm, JaakStudioosus2013 / lk. 23 https://www.ester.ee/record=b1558644*est

Vaginal microbiota of asymptomatic reproductive-age women in EstoniaDrell, Tiina; Lillsaar, Triin; Tummeleht, Lea; Simm, Jaak; Väin, E.; Saarma, I.; Metsis, MadisKeystone Symposia on Molecular and Cellular Biology, Colorado, USA, March 25-30 20112011

Veelkord TTÜ teadusarvustuste klastristSimm, JaakStudioosus2013 / lk. 24 https://www.ester.ee/record=b1558644*est