• Assessing the potential for sea-based macroalgae cultivation and its application for nutrient removal in the Baltic SeaKotta, Jonne; Raudsepp, Urmas; Szava-Kovats, Robert; Szava-Kovats, Robert; Aps, Robert; Armoskaite, Aurelija; Barda, Ieva; Bergström, Per; Futter, Martyn; Maljutenko, IljaScience of the total environment2022 / art. 156230 ; 14 p. : ill https://doi.org/10.1016/j.scitotenv.2022.156230 https://www.scopus.com/sourceid/25349 https://www.scopus.com/record/display.uri?eid=2-s2.0-85131147366&origin=inward&txGid=a6162c2c2b834aecc93e3f0bf18c6ced https://jcr.clarivate.com/jcr-jp/journal-profile?journal=SCI%20TOTAL%20ENVIRON&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000811732300010
• Corrigendum to “Assessing the potential for sea-based macroalgae cultivation and its application for nutrient removal in the Baltic Sea” [Sci. Total Environ. 839 (2022) 156230] (Science of the Total Environment (2022) 839, (S0048969722033277), (10.1016/j.scitotenv.2022.156230))Kotta, Jonne; Raudsepp, Urmas; Szava-Kovats, Robert; Aps, Robert; Armoskaite, Aurelija; Barda, Ieva; Bergström, Per; Futter, Martyn Norman; Gröndahl, Fredrik; Hargrave, Matthew S.; Jakubowska, Magdalena; Jänes, Holger; Kaasik, Ants; Kraufvelin, Patrik; Kovaltchouk, Nikolaj A.; Krost, Peter; Kulikowski, Tomasz; Kõivupuu, Anneliis; Kotta, Ilmar; Lees, Liisi; Loite, Sander; Maljutenko, Ilja; Nylund, Göran Mikael; Paalme, Tiina; Paviá, Henrik; Andersone, Ingrīda; Rahikainen, Moona M.; Sandow, Verena; Visch, Wouter; Yang, B.; Barboza, Francisco RafaelScience of the Total Environment2023 / art. 165870 https://doi.org/10.1016/j.scitotenv.2023.165870 https://www.scopus.com/sourceid/25349 https://www.scopus.com/record/display.uri?eid=2-s2.0-85171617312&origin=resultslist&sort=plf-f&src=s&sid=365e228bd7733d9c814abbc0da5f0648&sot=b&sdt=b&s=TITLE-ABS-KEY%28%22Corrigendum+to+%22Assessing+the+potential+for+sea-based+macroalgae+cultivation+and+its+application+for+nutrient+removal+in+the+Baltic+Sea%22+%5BSci.+Total+Environ.+839+%282022%29+156230%5D+%28Science+of+the+Total+Environment+%282022%29+839%2C+%28S0048969722033277%29%2C+%2810.1016%2Fj.scitotenv.2022.156230%29%29%22%29&sl=182&sessionSearchId=365e228bd7733d9c814abbc0da5f0648&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=SCI%20TOTAL%20ENVIRON&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001057609500001
• Current status, advancements and development needs of geospatial decision support tools for marine spatial planning in European seasDepellegrin, Daniel; Hansen, Henning Sten; Schrøder, Lise; Bergström, Lena; Romagnoni, Giovanni; Steenbeek, Jeroen; Goncalves, Magali; Carneiro, Goncalo; Kotta, Jonne; Fetissov, MihhailOcean & coastal management2021 / art. 105644 https://doi.org/10.1016/j.ocecoaman.2021.105644
• Differences in port pricing strategies : case of port and fairway fees in northern Baltic Sea countriesHunt, Tõnis; Tapaninen, Ulla Pirita; Kotta, JonneSustainability2025
• Doktoritöö soovib välja arendada vähemalt ühe rannakarbist tehtud tooteHõimoja, JaneMeremees : Eesti merendusajakiri = Estonian maritime magazine2022 / lk. 28-29 https://www.ester.ee/record=b4646644*est https://issuu.com/ajakirimeremees/docs/meremees_nr_316_issuu_1_
• An Eco-GAME meta-evaluation of existing methods for the appreciation of ecosystem servicesSajeva, Maurizio; Maidell, Marjo; Kotta, Jonne; Peterson, Anne-LiisSustainability2020 / art. 7805, 47 p. : ill https://doi.org/10.3390/su12187805
• Effectiveness of common benthic macrofaunal sampling methodology in boulder and cobble reefsLiversage, K.; Kotta, Jonne; Pajusalu, LiinaJournal of experimental marine biology and ecology2020 / art. 151413, 7 p https://doi.org/10.1016/j.jembe.2020.151413
• Food web responses to eutrophication control in a coastal area of the Baltic SeaSkov, Henrik; Rasmussen, Erik Kock; Kotta, Jonne; Middelboe, Anne Lise; Uhrenholdt, Thomas; Žydelis, RamunasEcological modelling2020 / art. 109249, 13 p. : ill https://doi.org/10.1016/j.ecolmodel.2020.109249
• From ecosystems to socio-economic benefits : a systematic review of coastal ecosystem services in the Baltic SeaHeckwolf, Melanie J.; Peterson, Anneliis; Jänes, Holger; Horne, Paula; Künne, Jana; Liversage, Kiran; Sajeva, Maurizio; Reusch, Thorsten B.H.; Kotta, JonneThe science of the total environment2021 / art. 142565, 11 p. : ill https://doi.org/10.1016/j.scitotenv.2020.142565
• Kas biomajandus saab sinine olla?Kindsigo, Merit; Kotta, Jonne; Lees, Liisisaartehaal.postimees.ee2023 https://saartehaal.postimees.ee/7699534/kas-biomajandus-saab-sinine-olla
• Linking atmospheric, terrestrial and aquatic environments : Regime shifts in the Estonian climate over the past 50 yearsKotta, Jonne; Herkül, Kristjan; Jaagus, Jaak; Kaasik, Ants; Raudsepp, Urmas; Alari, Victor; Laanemets, Jaan; Maljutenko, Ilja; Männik, Aarne; Reihan, AlvinaPLoS ONE2018 / e0209568, 20 p. : ill https://doi.org/10.1371/journal.pone.0209568 https://www.scopus.com/sourceid/10600153309 https://www.scopus.com/record/display.uri?eid=2-s2.0-85059238676&origin=inward&txGid=bd15b48780a7a8d98dc5ea52a7900a52 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=PLOS%20ONE&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000454418200030
• Läänemeri lämbub ja see on sinu süüParksepp, AnetteLP+Eesti Päevaleht2019 / lk. 16-17 https://epl.delfi.ee/uudised/laanemeri-lambub-ja-see-on-sinu-suu?id=86585721
• Maailmatasemel veebitööriist aitab hinnata keskkonnamõjuKotta, JonneMeremees : Eesti merendusajakiri = Estonian maritime magazine2023 / lk. 22-23 : ill https://issuu.com/ajakirimeremees/docs/meremees321 https://www.ester.ee/record=b4646644*est
• Methods for calculating greenhouse gas emissions in the Baltic Sea ports : a comparative studyTombak, Mari-Liis; Tapaninen, Ulla Pirita; Kotta, JonneSustainability2025 / art. 639 https://doi.org/10.3390/su17020639
• Micronisation of low-salinity Baltic Sea blue mussels : Enhancing whole-biomass utilization and nutritional viabilityAdler, Indrek; Kotta, Jonne; Vene, KristelFishes2025
• Next-generation smart response web (NG-SRW) : an operational spatial decision support system for maritime oil spill emergency response in the Gulf of Finland (Baltic Sea)Fetissov, Mihhail; Aps, Robert; Goerlandt, Floris; Jänes, Holger; Kotta, Jonne; Kujala, Pentti; Szava-Kovats, RobertSustainability2021 / art. 6585 https://doi.org/10.3390/su13126585
• Nitrogen and phosphorus discharges from cargo ships’ black and grey waters — a case study of a Baltic Sea portLappalainen, Suvi-Tuuli; Tapaninen, Ulla Pirita; Kotta, JonneOceans2024 / p. 560–570 https://doi.org/10.3390/oceans5030032 https://www.scopus.com/sourceid/21101164812 https://www.scopus.com/record/display.uri?eid=2-s2.0-85205122986&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=TITLE-ABS-KEY%28%22Nitrogen+and+phosphorus+discharges+from+cargo+ships%E2%80%99+black+and+grey+waters+%E2%80%94+a+case+study+of+a+Baltic+Sea+port%22%29&sessionSearchId=69510834adab9195e8ef2a068f63e89d&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=OCEANS-BASEL&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001322974400001
• Operationalisation of ecosystem services in support of ecosystem-based marine spatial planning : insights into needs and recommendationsGalparsoro, Ibon; Pınarbası, Kemal; Gissi, Elena; Culhane, Fiona; Gacutan, Jordan; Kotta, Jonne; Cabana, David; Wanke, Sonja; Fetissov, MihhailMarine Policy2021 / art. 104609 https://doi.org/10.1016/j.marpol.2021.104609
• Optimizing the processing of shellfish (Mytilus edulis and M. trossulus Hybrid) biomass cultivated in the Low Salinity Region of the Baltic Sea for the extraction of meat and proteinsAdler, Indrek; Kotta, Jonne; Tuvikene, Rando; Kaldre, KatrinApplied sciences2022 / art. 5163, 11 p. : ill https://doi.org/10.3390/app12105163 https://www.scopus.com/sourceid/21100829268 https://www.scopus.com/record/display.uri?eid=2-s2.0-85131048210&origin=inward&txGid=173d7dae15581374bef206b04b5cd4ff https://jcr.clarivate.com/jcr-jp/journal-profile?journal=APPL%20SCI-BASEL&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000802418900001
• A participatory geospatial toolkit for science integration and knowledge transfer informing SDGs based Governance and decision makingSajeva, Maurizio; Maidell, Marjo; Kotta, JonneSustainability2020 / art. 8088, 19 p. : ill https://doi.org/10.3390/su12198088
• Perceived multiple stressor effects depend on sample size and stressor gradient lengthMack, Leoni; Fernandez de la Hoz, Camino; Penk, Marcin; Piggott, Jeremy; Crowe, Tasman; Hering, Daniel; Kaijser, Willem; Aroviita, Jukka; Baer, Jan; Kotta, JonneWater research2022 / art. 119260 https://doi.org/10.1016/j.watres.2022.119260
• Regime shifts in the natural environment in the northern Baltic Sea region in late 1980sJaagus, Jaak; Alari, Victor; Arula, Timo; Järvet, Arvo; Kont, Are; Kotta, Jonne; Kull, Ain; Laanemets, Jaan; Männik, Aarne; Ojaveer, Henn; Raudsepp, Urmas; Reihan, Alvina; Rõõm, Rein; Sepp, Mait; Suursaar, Ülo; Tamm, Ottar; Tamm, Toomas; Tõnisson, Hannes10th Baltic Sea Science Congress : Science and innovation for future of the Baltic and the European regional seas : 15-19 June, 2015, Riga, Latvia : abstract book2015 / p. 64 http://www.bssc2015.lv/wp-content/uploads/2015/07/10th_BSSC_AbstractBook_final.pdf
• Towards efficient mapping of greenhouse gas emissions : a case study of the port of TallinnKotta, Jonne; Fetissov, Mihhail; Kaasik, Ellen; Väät, Janis; Štõkov, Stanislav; Tapaninen, Ulla PiritaSustainability2023 / art. 9520 https://doi.org/10.3390/su15129520 https://www.scopus.com/sourceid/21100240100 https://www.scopus.com/record/display.uri?eid=2-s2.0-85164110382&origin=inward&txGid=9d032f5b78b719e17cbf598886fb621e https://jcr.clarivate.com/jcr-jp/journal-profile?journal=SUSTAINABILITY-BASEL&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001017929400001
• A trophic cascade facilitates native habitat providers within assemblages of multiple invasive marine speciesLiversage, Kiran; Kotta, Jonne; Kuprijanov, Ivan; Rätsep, Margus; Nõomaa, K.Ecosphere2021 / p. 1-13 : ill https://doi.org/10.1002/ecs2.3621 https://www.scopus.com/sourceid/21100307458 https://www.scopus.com/record/display.uri?eid=2-s2.0-85111579376&origin=inward&txGid=7da4449b3b57d2189f2b346d0d286ad8 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=ECOSPHERE&year=2021 https://www.webofscience.com/wos/woscc/full-record/WOS:000667707100008
• Unlocking the potential of shellfish biomass : refining protein extraction from Baltic blue mussels for sustainable food applicationsAdler, Indrek; Kotta, Jonne; Tuvikene, Rando; Orav Kotta, HelenCogent food & agriculture2024 / art. 2405880, 13 p. : ill https://doi.org/10.1080/23311932.2024.2405880 https://www.scopus.com/sourceid/21101046172 https://www.scopus.com/record/display.uri?eid=2-s2.0-85204877290&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=TITLE-ABS-KEY%28%22Unlocking+the+potential+of+shellfish+biomass%3A+Refining+protein+extraction+from+Baltic+blue+mussels+for+sustainable+food+applications%22%29&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=COGENT%20FOOD%20AGR&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001317824200001
• Using machine learning methodology to model nutrient discharges from ports: a case study of a fertilizer terminalLappalainen, Suvi-Tuuli; Kotta, Jonne; Tombak, Mari-Liis; Tapaninen, Ulla PiritaJournal of marine science and engineering2024 / 12 p., ill https://doi.org/10.3390/jmse12010143 https://www.mdpi.com/2077-1312/12/1/143 https://www.scopus.com/sourceid/21100830140 https://www.scopus.com/record/display.uri?eid=2-s2.0-85183398904&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=TITLE-ABS-KEY%28%22Using+machine+learning+methodology+to+model+nutrient+discharges+from+ports%3A+a+case+study+of+a+fertilizer+terminal%22%29&sessionSearchId=8f8b8c017efec7148dd652d6fbd5901d&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20MAR%20SCI%20ENG&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001151272200001
• Valorization of Baltic Sea farmed blue mussels: Chemical profiling and prebiotic potential for nutraceutical and functional food developmentAdler, Indrek; Kotta, Jonne; Robal, Marju; Humayun, Sanjida; Vene, Kristel; Tuvikene, RandoFood Chemistry: X2024 / art. 101736, 14 p. https://doi.org/10.1016/j.fochx.2024.101736 https://www.scopus.com/sourceid/21100896855 https://www.scopus.com/record/display.uri?eid=2-s2.0-85201506370&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=ALL%28%22Valorization+of+Baltic+Sea+farmed+blue+mussels%3A+Chemical+profiling+and+prebiotic+potential+for+nutraceutical+and+functional+food+development%22%29&sessionSearchId=30fa60ac68bfdb69b4742829436cd1ae https://jcr.clarivate.com/jcr-jp/journal-profile?journal=FOOD%20CHEM%20X&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001297241000001
• Vesiviljelus : meri saab puhtamaks ja inimesed leivakõrvastAlvela, AinTeejuht : maal, vees ja õhus : Transpordiameti digiajakiri2023 / lk. 16-19 : fot https://www.ester.ee/record=b5495900*est https://digiajakiri.transpordiamet.ee/view/193588123/18/