• BAC transgenic mice reveal distal cis-regulatory elements governing BDNF gene expressionKoppel, Indrek; Aid-Pavlidis, Tamara; Jaanson, Kaur; Sepp, Mari; Palm, Kaia; Timmusk, TõnisGenesis2010 / 4, p. 214-219 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2978326/
• Cell type-specific labelling of newly synthesized proteins by puromycin inactivationCabrera-Cabrera, Florencia; Tull, Helena; Capuana, Roberta; Kasvandik, Sergo; Timmusk, Tõnis; Koppel, IndrekJournal of biological chemistry2023 / art. 105129, 12 p. : ill https://doi.org/10.1016/j.jbc.2023.105129 https://www.scopus.com/sourceid/17592 https://www.scopus.com/record/display.uri?eid=2-s2.0-85170425352&origin=inward&txGid=3f4b7aa5d1814f93294a65ae2a9aa546
• Differential regulation of Bdnf expression in cortical neurons by class-selective histone deacetylase inhibitorsKoppel, Indrek; Timmusk, TõnisNeuropharmacology2013 / p. 106-115 : ill https://doi.org/10.1016/j.neuropharm.2013.07.015 https://www.scopus.com/sourceid/20435 https://www.scopus.com/record/display.uri?eid=2-s2.0-84883020198&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1016%2Fj.neuropharm.2013.07.015%29&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=NEUROPHARMACOLOGY&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000330490300012
• Dopamine cross‐reacts with adrenoreceptors in cortical astrocytes to induce BDNF expression, CREB signaling and morphological transformationKoppel, Indrek; Jaanson, Kaur; Klasche, Airi; Tuvikene, Jürgen; Tiirik, Tõnis; Pärn, Angela; Timmusk, TõnisGLIA2018 / p. 206-216 : ill https://doi.org/10.1002/glia.23238 https://www.scopus.com/sourceid/15686 https://www.scopus.com/record/display.uri?eid=2-s2.0-85034065232&origin=inward&txGid=8fec59e08ce676004f47c6d5283cf631 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=GLIA&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000415730300014
• Efficient use of a translation start codon in BDNF exon IKoppel, Indrek; Tuvikene, Jürgen; Lekk, Ingrid; Timmusk, TõnisJournal of neurochemistry2015 / p. 1015-1025 : ill https://doi.org/10.1111/jnc.13124 https://www.scopus.com/sourceid/17620 https://www.scopus.com/record/display.uri?eid=2-s2.0-84941804157&origin=inward&txGid=748d18c68123c0aefb6ea4c1eeb2f756 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20NEUROCHEM&year=2015 https://www.webofscience.com/wos/woscc/full-record/WOS:000362827600004
• An 840 kb distant upstream enhancer is a crucial regulator of catecholamine-dependent expression of the BDNF gene in astrocytes
  Avarlaid, Annela; Esvald, Eli-Eelika; Koppel, Indrek; Parkman, Annabel; Zhuravskaya, Anna; Makeyev, Eugene V.; Tuvikene, Jürgen; Timmusk, TõnisGlia2023 / p. 90-110 : ill https://doi.org/10.1002/glia.24463
• Geneetik Andres Veske (4.7.1965 – 23.10.2022) [Võrguväljaanne]Tamme, Richard; Koppel, Indrekpostimees.ee2022 https://teadus.postimees.ee/7635110/in-memoriam-geneetik-andres-veske-4-7-1965-23-10-2022
• Glucocorticoid receptor stimulation resulting from early life stress affects expression of DNA methyltransferases in rat prefrontal cortexUrb, Mari; Anier, Kaili; Matsalu, Terje; Koppel, Indrek; Timmusk, TõnisJournal of molecular neuroscience2019 / p. 99–110 : ill https://doi.org/10.1007/s12031-019-01286-z https://www.scopus.com/sourceid/16732 https://www.scopus.com/record/display.uri?eid=2-s2.0-85062683833&origin=inward&txGid=7f16fca547738ff1dc17c37355966716 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20MOL%20NEUROSCI&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000464208600011
• Identification of cis-elements and transcription factors regulating neuronal activity-dependent transcription of human BDNF genePruunsild, Priit; Sepp, Mari; Orav, Ester; Koppel, Indrek; Timmusk, TõnisThe journal of neuroscience2011 / p. 3295-3308 : ill https://pubmed.ncbi.nlm.nih.gov/21368041/
• Inimaju asümmeetriast, käelisusest ja skisofreeniastKoppel, Indrek; Pruunsild, Priit; Timmusk, TõnisTallinna Tehnikaülikooli aastaraamat 20072008 / lk. 109-112
• Locally translated mTOR controls axonal local translation in nerve injuryTerenzio, Marco; Koley, Sandip; Samra, Nitzan; Koppel, IndrekScience2018 / p. 1416-1421 : ill http://dx.doi.org/10.1126/science.aan1053
• LRRTM1 on chromosome 2p12 is a maternally suppressed gene that is associated paternally with handedness and schizophreniaFrancks, C.; Maegawa, S.; Timmusk, Tõnis; Pruunsild, Priit; Koppel, IndrekMolecular psychiatry2007 / p. 1129-1139 https://www.researchgate.net/publication/6171287_LRRTM1_on_chromosome_2p12_is_a_maternally_suppressed_gene_that_is_associated_paternally_with_handedness_and_schizophrenia
• Neurotroofsed teguridTimmusk, Tõnis; Koppel, Indrek; Pruunsild, Priit; Sepp, Mari; Tamme, RichardEesti Arst2007 / 9, lk. 614-621 https://eestiarst.ee/neurotroofsed-tegurid/ https://artiklid.elnet.ee/record=b1059643*est
• Omics approaches for subcellular translation studiesKoppel, Indrek; Fainzilber, MikeMolecular omics2018 / p. 380–388 : ill http://dx.doi.org/10.1039/c8mo00172c
• Rakuvälise serotoniini tasemed ja neurotroofiliste faktorite ekspressioon kõrge või madala uudistamisaktiivsusega rottidelHarro, Jaanus; Mällo, Tanel; Kõiv, Kadri; Koppel, Indrek; Raudkivi, Karita; Uustare, Ain; Rinken, Ago; Timmusk, TõnisXXX Eesti keemiapäevad : teaduskonverentsi teesid = 30th Estonian Chemistry Days : abstracts of scientific conference2007 / lk. 32-33
• Rat NEURL1 3'UTR is alternatively spliced and targets mRNA to dendritesJaagura, Madis; Taal, Kati; Koppel, Indrek; Tuvikene, Jürgen; Timmusk, Tõnis; Tamme, RichardNeuroscience letters2016 / p. 71-76 : ill https://doi.org/10.1016/j.neulet.2016.10.041 https://www.scopus.com/sourceid/18046 https://www.scopus.com/record/display.uri?eid=2-s2.0-84993929142&origin=inward&txGid=59d5602bf46a40cdfe81927ee7265489 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=NEUROSCI%20LETT&year=2016 https://www.webofscience.com/wos/woscc/full-record/WOS:000389100700012
• Regulation of extracellular serotonin levels and brain-derived neurotrophic factor in rats with high and low exploratory activityMällo, Tanel; Kõiv, Kadri; Koppel, Indrek; Raudkivi, Karita; Uustare, Ain; Rinken, Ago; Timmusk, Tõnis; Harro, JaanusBrain research2008 / p. 110-117 : ill https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2568862/
• Revisiting the expression of BDNF and its receptors in mammalian developmentEsvald, Eli-Eelika; Tuvikene, Jürgen; Kiir, Carl Sander; Avarlaid, Annela; Tamberg, Laura; Sirp, Alex; Shubina, Anastassia; Cabrera-Cabrera, Florencia; Pihlak, Arno; Koppel, Indrek; Palm, Kaia; Timmusk, TõnisFrontiers in Molecular Neuroscience2023 / art. 1182499 https://doi.org/10.3389/fnmol.2023.1182499 https://www.scopus.com/sourceid/19700175113 https://www.scopus.com/record/display.uri?eid=2-s2.0-85164507120&origin=inward&txGid=86a847fd9de702209fbd963d62d5acd3 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=FRONT%20MOL%20NEUROSCI&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001022998200001
• The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localizationDoron-Mandel, Ella; Koppel, Indrek; Abraham, Ofri; Rishal, IdaThe EMBO Journal2021 / art. e107158 https://doi.org/10.15252/embj.2020107158 https://www.scopus.com/sourceid/17435 https://www.scopus.com/record/display.uri?eid=2-s2.0-85114717476&origin=inward&txGid=c1d0ba7bc5a26527c554ad64d41cb7e4 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=EMBO%20J&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000695159300001
• Tissue-specific and neural activity-regulated expression of human BDNF gene in BAC transgenic miceKoppel, Indrek; Aid-Pavlidis, Tamara; Jaanson, Kaur; Sepp, Mari; Pruunsild, Priit; Palm, Kaia; Timmusk, TõnisBMC neuroscience2009 / p. 68 https://psycnet.apa.org/record/2009-11273-001
• Transcriptional mechanisms of BDNF gene regulation = BDNF geeni avaldumise transkriptsioonilised mehhanismidKoppel, Indrek2013 https://www.ester.ee/record=b3046255*est
• Translatome regulation in neuronal injury and axon regrowthRozenbaum, Meir; Rajman, Marek; Rishal, Ida; Koppel, IndrekeNeuro2018 / art. e0276-17.2018, 15 p. : ill http://dx.doi.org/10.1523/ENEURO.0276-17.2018
• Untranslated regions of brain-derived neurotrophic factor (Bdnf) mRNA control its translatability and subcellular localizationLekk, Ingrid; Cabrera-Cabrera, Florencia; Turconi, Giorgio; Tuvikene, Jürgen; Esvald, Eli-Eelika; Rähni, Annika; Casserly, Laoise; Garton, Daniel R.; Andressoo, Jaan-Olle; Timmusk, Tõnis; Koppel, IndrekThe journal of biological chemistry2023 / art. 102897 https://doi.org/10.1016/j.jbc.2023.102897 https://www.scopus.com/sourceid/17592 https://www.scopus.com/record/display.uri?eid=2-s2.0-85147854552&origin=inward&txGid=c9792860a6dbac8d12cdcf2f9b638828 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20BIOL%20CHEM&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001009112200001
• Uued inimesed ja positsioonidKoppel, Indrek; Mazina-Šinkar, Jekaterina; Soe, Ralf-Martin; Ošeka, Maksim; Kritševskaja, Marina; Reidolf, Merli; Laasmaa, Martin; Puura, Erik; Läänelaid, Mihkel; Hadzihasanovic, AmarMente et Manu2023 / lk. 51-55 : fot https://www.ester.ee/record=b1242496*est
• Uuring: seni kasutuks peetud DNA toetab närvirakkude taastumistnovaator.err.ee2025 https://novaator.err.ee/1609700370/uuring-seni-kasutuks-peetud-dna-toetab-narvirakkude-taastumist
• Valmistudes teiseks laineks: Iisraeli õppetunnidKoppel, IndrekPostimees2020 / Lk. 15 : portr https://leht.postimees.ee/7016165/indrek-koppel-valmistudes-teiseks-laineks-iisraeli-oppetunnid https://dea.digar.ee/article/postimees/2020/07/13/13.2
• генетик АНДРЕС ВЕСКЕ (4.7.1965 - 23.10.2022) [Online resource]Tamme, Richard; Koppel, Indrekrus.postimees.ee2022 https://rus.postimees.ee/7635876/in-memoriam-genetik-andres-veske-4-7-1965-23-10-2022