• Absolute quantification of viable bacteria abundances in food by next-generation sequencing : quantitative NGS of viable microbesKallastu, Aili; Malv, Esther; Aro, Valter; Meikas, Anne; Vendelin, Mariann; Kattel, Anna; Nahku, Ranno; Kazantseva, JekaterinaCurrent Research in Food Science2023 / art. 100443 https://doi.org/10.1016/j.crfs.2023.100443 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS
• Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rateMaser, Andres; Peebo, Karl; Vilu, Raivo; Nahku, RannoResearch in microbiology2020 / p. 185−193 https://doi.org/10.1016/j.resmic.2020.02.001 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS
• Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growthMaser, Andres; Peebo, Karl; Nahku, RannoMicrobiology2019 / p. 37-46 : ill https://doi.org/10.1099/mic.0.000742 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS
• Co-culture process development using individual substratesKattel, Anna; Morell, Indrek; Aro, Valter; Nahku, Ranno; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 28
• Comparison and applications of label-free absolute proteome quantification methods on Escherichia coliArike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of proteomics2012 / p. 5437-5448 : ill https://pubmed.ncbi.nlm.nih.gov/22771841/
• Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coliPeebo, Karl; Valgepea, Kaspar; Nahku, Ranno; Riis, Gethe; Õun, Mikk; Adamberg, Kaarel; Vilu, RaivoApplied microbiology and biotechnology2014 / p. 5131-5143 : ill
• Detailed analysis of metabolism reveals growth-rate-promoting interactions between Anaerostipes caccae and Bacteroides sppKattel, Anna; Morell, Indrek; Aro, Valter; Lahtvee, Petri-Jaan; Vilu, Raivo; Jõers, Arvi; Nahku, RannoAnaerobe2023 / art. 102680 https://doi.org/10.1016/j.anaerobe.2022.102680 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS
• Development of consortia bioprocesses for efficient production of probioticsNahku, Ranno; Aro, Valter; Kattel, Anna; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 42
• Evaluating the effect of different fibers on a simplified gut microbiotaAro, Valter; Kattel, Anna; Nahku, Ranno; Viiard, Ene; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 19 https://tftak.eu/foodbalt/assets/files/Foodbalt_Book_of_Abstracs.pdf
• Exploring the resilience and stability of a defined human gut microbiota consortium : an isothermal microcalorimetric studyKattel, Anna; Aro, Valter; Lahtvee, Petri-Jaan; Kazantseva, Jekaterina; Jõers, Arvi; Nahku, Ranno; Belouah, IsmaMicrobiologyOpen2024 / art. e1430 https://doi.org/10.1002/mbo3.1430
• Identification and relative quantification of proteins in Escherichia coli proteome by “up-front” collision-induced dissociationArike, Liisa; Nahku, Ranno; Borissova, Maria; Adamberg, Kaarel; Vilu, RaivoEuropean journal of mass spectrometry2010 / 2, p. 227-235 https://pubmed.ncbi.nlm.nih.gov/20212332/
• Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth ratesLahtvee, Petri-Jaan; Adamberg, Kaarel; Arike, Liisa; Nahku, Ranno; Aller, Kadri; Vilu, RaivoMicrobial cell factories2011 / Article no. 12
• Proteome reallocation in Escherichia coli with increasing specific growth ratePeebo, Karl; Valgepea, Kaspar; Maser, Andres; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoMolecular biosystems2015 / p. 1184-1193 : ill http://dx.doi.org/10.1039/c4mb00721b
• The quantitative measurement of peptidoglycan components obtained from acidic hydrolysis in gram-positive and gram-negative bacteria via hydrophilic interaction liquid chromatography coupled with mass spectrometryPismennõi, Dmitri; Kattel, Anna; Belouah, Isma; Nahku, Ranno; Vilu, Raivo; Kobrin, Eeva-GerdaMicroorganisms2023 / art. 2134, 13 p. : ill https://doi.org/10.3390/microorganisms11092134 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS
• Specific growth rate dependent transcriptiome profiling of Escherichia coli K12 MG1655 in accelerostat culturesNahku, Ranno; Valgepea, Kaspar; Lahtvee, Petri-Jaan; Erm, Sten; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoJournal of biotechnology2010 / 1, p. 60-65 https://www.sciencedirect.com/science/article/pii/S0168165609004726
• Steady state growth space study of Lactococcus lactis in D-stat culturesLahtvee, Petri-Jaan; Valgepea, Kaspar; Nahku, Ranno; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoAntonie van Leeuwenhoek2009 / 4, p. 487-496 https://pubmed.ncbi.nlm.nih.gov/19603284/
• Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous cultureNahku, Ranno; Peebo, Karl; Valgepea, Kaspar; Barrick, Jeffrey E.; Adamberg, Kaarel; Vilu, RaivoMicrobiology2011 / p. 2604-2610 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352173/
• Systems biology approach reveals that overflow metabolism of acetate in Escheria coli is triggered by carbon catabolite repression of acetyl-CoA synthetaseValgepea, Kaspar; Adamberg, Kaarel; Nahku, Ranno; Lahtvee, Petri-Jaan; Arike, Liisa; Vilu, RaivoBMC systems biology2010 / p. 166 https://pubmed.ncbi.nlm.nih.gov/21122111/
• Validation of critical factors for the quantitative characterization of bacterial physiology in accelerostat cultures = Kriitiliste faktorite valideerimine bakterite füsioloogia uurimiseks akselerostaatsetes kultiveerimiseksperimentidesNahku, Ranno2012