• A new method of continuous cultivation with computer controlled change of dilution ratePaalme, Toomas; Vilu, RaivoProceedings of ICCAFT5/IFAC2-BIO2, Keystone, Colorado, April, 19921992 https://www.sciencedirect.com/science/article/pii/S1474667017503766
  • Absolute quantitative multi-omics characterization of specific growth rate-dependent metabolism of Escherichia coli = Absoluutselt kvantitatiivsetel oomikameetoditel põhinev kasvuerikiirusest sõltuva Escherichia coli metabolismi kirjeldamineValgepea, Kaspar2014 https://digi.lib.ttu.ee/i/?1089
  • Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growthMaser, Andres; Peebo, Karl; Nahku, RannoMicrobiology2019 / p. 37-46 : ill https://doi.org/10.1099/mic.0.000742 https://www.scopus.com/sourceid/20268 https://www.scopus.com/record/display.uri?eid=2-s2.0-85059496868&origin=inward&txGid=243063df9285c9213158c404e705b4ec https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MICROBIOL-SGM&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000462254100005
  • Comparison and applications of label-free absolute proteome quantification methods on Escherichia coliArike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of proteomics2012 / p. 5437-5448 : ill https://pubmed.ncbi.nlm.nih.gov/22771841/
  • A conundrum of r-protein stability : unbalanced stoichiometry of r-proteins during stationary phase in Escherichia coliReier, Kaspar; Lahtvee, Petri-Jaan; Liiv, Aivar; Remme, JaanusmBio2022 / art. e01873-22 : ill https://doi.org/10.1128/mbio.01873-22 https://www.scopus.com/sourceid/19700188403 https://www.scopus.com/record/display.uri?eid=2-s2.0-85140856611&origin=inward&txGid=586eab61eee391a90c76f0a653356046 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MBIO&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000842384400001
  • Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coliPeebo, Karl; Valgepea, Kaspar; Nahku, Ranno; Riis, Gethe; Õun, Mikk; Adamberg, Kaarel; Vilu, RaivoApplied microbiology and biotechnology2014 / p. 5131-5143 : ill https://doi.org/10.1007/s00253-014-5613-y https://www.scopus.com/sourceid/14957 https://www.scopus.com/record/display.uri?eid=2-s2.0-84901685293&origin=inward&txGid=d79d12b3679b0b8b7f83c15c2f0f55ab https://jcr.clarivate.com/jcr-jp/journal-profile?journal=APPL%20MICROBIOL%20BIOT&year=2014 https://www.webofscience.com/wos/woscc/full-record/WOS:000336268900031
  • Corrigendum to: "Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli" [J Proteomics 75 (17) (2012) 5437-5448]Arike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of Proteomics2013 / p. 619 https://doi.org/10.1016/j.jprot.2013.07.012 https://www.scopus.com/sourceid/11700154304 https://www.scopus.com/record/display.uri?eid=2-s2.0-84890607302&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1016%2Fj.jprot.2013.07.012%29&sessionSearchId=08e7c58f88aea92900d731f06ee215ed https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20PROTEOMICS&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000327906000049
  • Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wastingValgepea, Kaspar; Adamberg, Kaarel; Vilu, RaivoBMC systems biology2011 / p. 106 https://pubmed.ncbi.nlm.nih.gov/21726468/
  • Detection of bioavailable heavy metals in EILATox-Oregon samples using whole-cell luminescent bacterial sensors in suspension or immobilized onto fibre-optic tipsHakkila, K.; Green, T.; Leskinen, P.; Ivask, Angela; Marks, R.; Virta, MarkoJournal of applied toxicology2004 / 5, p. 333-342 https://pubmed.ncbi.nlm.nih.gov/15478176/
  • Differential susceptibility of catheter biomaterials to biofilm-associated infections and their remedy by drug-encapsulated eudragit RL100 nanoparticlesPandey, Vivek Kumar; Srivastava, Kumar Rohit; Ajmal, Gufran; Thakur, Vijay Kumar; Gupta, Vijai Kumar; Upadhyay, Siddh Nath; Mishra, Pradeep KumarInternational Journal of Molecular Sciences2019 / Art. nr. 5110 https://doi.org/10.3390/ijms20205110 https://www.scopus.com/sourceid/25879 https://www.scopus.com/record/display.uri?eid=2-s2.0-85073414992&origin=inward&txGid=7bd085c8997a19b062b057d48f1d9757 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=INT%20J%20MOL%20SCI&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000498822800142
  • Dissolution of silver nanowires and nanospheres dictates their toxicity to escherichia coliVisnapuu, Meeri; Joost, Urmas; Juganson, Katre; Künnis-Beres, Kai; Kahru, Anne; Kisand, Vambola; Ivask, AngelaBioMed Research International2013 / art. 819252 https://doi.org/10.1155/2013/819252 https://www.scopus.com/sourceid/21100230018 https://www.scopus.com/record/display.uri?eid=2-s2.0-84884255153&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1155%2F2013%2F819252%29&sessionSearchId=0176cc9edb6fd261eb93365f6daa1060 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=BIOMED%20RES%20INT&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000323979000001
  • Ekspert: Kuressaares tuleb ilmselt paar nädalat vett keeta, vanni minna ei soovitamaaleht.delfi.ee2023 https://maaleht.delfi.ee/artikkel/120185272/ekspert-kuressaares-tuleb-ilmselt-paar-nadalat-vett-keeta-vanni-minna-ei-soovita
  • Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteinsValgepea, Kaspar; Adamberg, Kaarel; Seiman, Andrus; Vilu, RaivoMolecular biosystems2013 / p. 2344-2358 : ill https://doi.org/10.1039/c3mb70119k https://www.scopus.com/sourceid/145703 https://www.scopus.com/record/display.uri?eid=2-s2.0-84881087942&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1039%2Fc3mb70119k%29&sessionSearchId=a8bfbd7082bd7a0293722547f74d2a8f https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MOL%20BIOSYST&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000322447600015
  • Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteinsValgepea, Kaspar; Adamberg, Kaarel; Seiman, Andrus; Vilu, RaivoTÜ ja TTÜ doktorikool "Funktsionaalsed materjalid ja tehnoloogiad" : 04.-05. märts 2014, Tartu2014 / [1] p
  • Escherichia coli kultiveerimine raskel veelVanatalu, KaljuEMS 96 teaduskonverents, 6.-7. juuni 1996, Tallinn = EMS 96 Scientific Conference, 6-7 June 1996, Tallinn1996 / [1] p
  • Experts: Faulty construction led to Kuressaare's 2023 water contaminationerr.ee2025 https://news.err.ee/1609635455/experts-faulty-construction-led-to-kuressaare-s-2023-water-contamination
  • Fed-batch growth of auxotrophic E. coli in fully deuterated mediumVanatalu, KaljuInternational Union of Microbiological Societes, IUMS Congress '96. 8th International Congress of Bacteriology and Applied Microbiology Division. 8th International Congress of Mycology Division, Jerusalem, Israel, Aug. 18-23, 1996 : abstracts1996 / p. 14
  • Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth ratesEsquerré, Thomas; Moisan, Annick; Chiapello, Hélène; Arike, Liisa; Vilu, Raivo; Gaspin, Christine; Cocaign-Bousquet, Muriel; Girbal, LaurenceBMC Genomics2015 / art. 275 https://doi.org/10.1186/s12864-015-1482-8 https://www.scopus.com/sourceid/21727 https://www.scopus.com/record/display.uri?eid=2-s2.0-85043226173&origin=inward&txGid=d42c018187cc237699cd80bac742c86c https://jcr.clarivate.com/jcr-jp/journal-profile?journal=BMC%20GENOMICS&year=2015 https://www.webofscience.com/wos/woscc/full-record/WOS:000354014400001
  • Identification and relative quantification of proteins in Escherichia coli proteome by “up-front” collision-induced dissociationArike, Liisa; Nahku, Ranno; Borissova, Maria; Adamberg, Kaarel; Vilu, RaivoEuropean journal of mass spectrometry2010 / 2, p. 227-235 https://pubmed.ncbi.nlm.nih.gov/20212332/
  • Identification and relative quantification of proteins in Esheria coli proteome using up-front CIDArike, LiisaNoSSS2009 : 5th Conference on Separation and Related Techniques by Nordic Separation Science Society : 26-29 August, 2009, Tallinn University of Technology, Estonia : abstract book and program2009 / p. 75
  • Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathwaysPey, Jon; Valgepea, Kaspar; Rubio, Angel; Beasley, John E; Planes, Francisco JavierBMC Systems Biology2013 / art. 134 https://doi.org/10.1186/1752-0509-7-134 https://www.scopus.com/sourceid/6700153291 https://www.scopus.com/record/display.uri?eid=2-s2.0-84889040435&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1186%2F1752-0509-7-134%29&sessionSearchId=09c53dd41ef9fa4501d393829f4e1654 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=BMC%20SYST%20BIOL&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000329782000001
  • Kuressaare veereostuse eel ei tehtud läbipesu ega mõõtmisierr.ee2025 https://www.err.ee/1609635407/kuressaare-veereostuse-eel-ei-tehtud-labipesu-ega-mootmisi
  • Large-scale preparation of fully deuterated cell components. Ribosomes from Escherichia coli with high biological activityVanatalu, K.; Paalme, Toomas; Vilu, Raivo; Burkhardt, N.; Jünemann, R.; May, R.; Rühl, M.; Wadzack, J.; Nierhaus, K.H.European journal of biochemistry1993 / p. 315-321 https://febs.onlinelibrary.wiley.com/doi/10.1111/j.1432-1033.1993.tb18148.x
  • Lean-proteome strains - next step in metabolic engineeringValgepea, Kaspar; Peebo, Karl; Adamberg, Kaarel; Vilu, RaivoFrontiers in bioengineering and biotechnology2015 / p. 1-4 https://doi.org/10.3389/fbioe.2015.00011 https://www.scopus.com/sourceid/21100835954 https://www.scopus.com/record/display.uri?eid=2-s2.0-84978808486&origin=inward&txGid=af50e7fb775007b7bbfc390c31da700d https://jcr.clarivate.com/jcr-jp/journal-profile?journal=FRONT%20BIOENG%20BIOTECH&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000536548500009
  • Levan enhances associated growth of Bacteroides, Escherichia, Streptococcus and Faecalibacterium in fecal microbiotaAdamberg, Kaarel; Tomson, Katrin; Talve, Tiina; Pudova, Ksenia; Puurand, Marju; Visnapuu, Triinu; Alamäe, Tiina; Adamberg, SignePLoS ONE2015 / p. 1-18 : ill https://doi.org/10.1371/journal.pone.0144042 https://www.scopus.com/sourceid/10600153309 https://www.scopus.com/record/display.uri?eid=2-s2.0-84955444679&origin=inward&txGid=451095df386d7e48041aa9666099e39d https://jcr.clarivate.com/jcr-jp/journal-profile?journal=PLOS%20ONE&year=2015 https://www.webofscience.com/wos/woscc/full-record/WOS:000365926300143
  • Motiliini ekspresseerimisest Escherichia coli'sTomson, Katrin; Vanatalu, K.XXVIII Eesti keemiapäevad : teaduskonverentsi ettekannete teesid = 28th Estonian Chemistry Days : abstracts of scientific conference2002 / lk. 141-142
  • A multifunctional strontium/silver-co-substituted hydroxyapatite derived from biogenic source as antibacterial biomaterialRessler, Antonia; Ivanković, Tomislav; Polak, Bruno; Ivanišević, Irena; Kovačić, Marin; Urlić, Inga; Hussainova, Irina; Ivanković, HrvojeCeramics International2022 / p. 18361 - 18373 https://doi.org/10.1016/j.ceramint.2022.03.095 https://www.scopus.com/sourceid/21522 https://www.scopus.com/record/display.uri?eid=2-s2.0-85126956391&origin=inward&txGid=f609fa80970bcb0fba37522da114041a https://jcr.clarivate.com/jcr-jp/journal-profile?journal=CERAM%20INT&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000807204700001
  • Nähtamatu koostöö: mikroplast tõstab bakterite vastupanuvõimetOlman, Triininovaator.err.ee2025 https://novaator.err.ee/1609719219/nahtamatu-koostoo-mikroplast-tostab-bakterite-vastupanuvoimet
  • Photocatalytic antibacterial activity of nano-TiO2 (anatase)-based thin films : effects on Escherichia coli cells and fatty acidsJoost, Urmas; Juganson, Katre; Visnapuu, Meeri; Mortimer, Monika; Kahru, Anne; Nõmmiste, Ergo; Joost, Urmeli; Kisand, Vambola; Ivask, AngelaJournal of photochemistry and photobiology B : biology2015 / p. 178-185 : ill https://doi.org/10.1016/j.jphotobiol.2014.12.010 https://www.scopus.com/sourceid/17622 https://www.scopus.com/record/display.uri?eid=2-s2.0-84919934331&origin=inward&txGid=0f256980a52976cc6eb766a843ba6ad4 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20PHOTOCH%20PHOTOBIO%20B&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000349727400021
  • Pipes not flushed nor measurements taken before Kuressaare water pollutionnews.err.ee2025 https://news.err.ee/1609636163/pipes-not-flushed-nor-measurements-taken-before-kuressaare-water-pollution
  • Production of labelled recombinant proteins in fed-batch system in Escherchia coli = Märgistatud rekombinantsete valkude tootmine Escherichia coli fed-batch süsteemidesTomson, Katrin2007 https://www.ester.ee/record=b2324657*est
  • Proteome reallocation in Escherichia coli with increasing specific growth ratePeebo, Karl; Valgepea, Kaspar; Maser, Andres; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoMolecular biosystems2015 / p. 1184-1193 : ill https://doi.org/10.1039/c4mb00721b https://www.scopus.com/sourceid/145703 https://www.scopus.com/record/display.uri?eid=2-s2.0-84925014516&origin=inward&txGid=ba40d0eaec286dc5bf908cf06818627f https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MOL%20BIOSYST&year=2015 https://www.webofscience.com/wos/woscc/full-record/WOS:000351493300019
  • Quantitative proteomics of Escherichia coli : from relative to absolute scale = Kvantitatiivne Escherichia coli proteoomika : relatiivsetest numbritest absoluutsete kogusteniArike, Liisa2012 http://www.ester.ee/record=b2931221*est
  • Rannahooaeg läheneb vankumatu kiirusega – Stroomi ranna külastajatele on algavaks suveks üks hea ja üks halb uudis [Võrguväljaanne]Pau, Aivarforte.delfi.ee2021 https://forte.delfi.ee/artikkel/95320011/stroomi-ranna-kulastajatele-on-jargmise-aasta-suveks-uks-hea-ja-uks-halb-uudis
  • Specific growth rate dependent transcriptiome profiling of Escherichia coli K12 MG1655 in accelerostat culturesNahku, Ranno; Valgepea, Kaspar; Lahtvee, Petri-Jaan; Erm, Sten; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoJournal of biotechnology2010 / 1, p. 60-65 https://www.sciencedirect.com/science/article/pii/S0168165609004726
  • Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous cultureNahku, Ranno; Peebo, Karl; Valgepea, Kaspar; Barrick, Jeffrey E.; Adamberg, Kaarel; Vilu, RaivoMicrobiology2011 / p. 2604-2610 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352173/
  • TalTechi ekspertuuring tuvastas Kuressaare veereostuse põhjusedehitusleht.ee2025 https://ehitusleht.ee/taltechi-ekspertuuring-tuvastas-kuressaare-veereostuse-pohjused/
  • The growth rate control in Escherichia coli at near to maximum growth rates : the A-stat approachPaalme, Toomas; Elken, R.; Kahru, Anne; Vanatalu, Kalju; Vilu, RaivoAntonie van Leeuwenhoek journal of microbiology1997 / p. 217-230: ill
  • The transcription factor network of E. coli steers global responses to shifts in RNAP concentrationAlmeida, Bilena L.B.; Bahrudeen, Mohamed N. M.; Chauhan, Vatsala; Dash, Suchintak; Kandavalli, Vinodh; Häkkinen, Antti; Lloyd-Price, Jason; Cristina, Palma S. D.; Baptista, Ines S. C.; Smolander, Olli-PekkaNucleic acids research2022 / p. 6801-6819 https://doi.org/10.1093/nar/gkac540 https://www.scopus.com/sourceid/14204 https://www.scopus.com/record/display.uri?eid=2-s2.0-85134506702&origin=inward&txGid=9eb2b4ac30588e6534b98911661112ce https://jcr.clarivate.com/jcr-jp/journal-profile?journal=NUCLEIC%20ACIDS%20RES&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000815165900001
  • uCARE Chem Suite and uCAREChemSuiteCLI : tools for bacterial resistome predictionSaha, Saurav Bhaskar; Gupta, Vijai Kumar; Ramteke, Pramod WasudeoGenes and Diseases2021 / p. 721 - 729 https://doi.org/10.1016/j.gendis.2020.06.008 https://www.scopus.com/sourceid/21100414802 https://www.scopus.com/record/display.uri?eid=2-s2.0-85088792890&origin=inward&txGid=48a3582556fc37627834f0bddb07fa60 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=GENES%20DIS&year=2022 https://www.webofscience.com/wos/woscc/summary/3b7c802c-a619-4ab9-a0b5-1fa82d8ae33b-9da4eb54/relevance/1
  • Vee kvaliteet [Võrguteavik] : Escherichia coli ja coli-laadsete bakterite loendamine. Osa 1, Membraanfiltreerimise meetod madala bakteriaalse fooniga veele = Water quality : enumeration of Escherichia coli and coliform bacteria. Part 1, Membrane filtration method for waters with low bacterial background flora (ISO 9308-1:2014+ISO 9308-1:2014/Amd 1:2016)2017 https://www.ester.ee/record=b4652098*est
  • Vee kvaliteet [Võrguteavik] : Escherichia coli ja coli-laadsete bakterite loendamine. Osa 1, Membraanfiltreerimise meetod madala bakteriaalse fooniga veele = Water quality : enumeration of Escherichia coli and coliform bacteria. Part 1, Membrane filtration method for waters with low bacterial background flora (ISO 9308-1:2014)2015 http://www.ester.ee/record=b4502748*est
  • Адаптация E coli к различным температурам морской водыAlton, Leelo-SiiriПроблемы современной экологии. [1] : исследования природных экосистем Эстонии : материалы республиканской конференции, проведенной с 11 по 13 декабря 1978 г., [в Тарту] = Problems of contemporary ecology : researches into Estonian natural ecosystems : abstracts of the republican confrerence held in Tartu, from 11 to 13 December, 19781978 / с. 117-118 https://www.ester.ee/record=b1314403*est
  • Иммобилизация клеток микроорганизмов с аспартазной активностью. II, Иммобилизация клеток Escherichia coliKalda, Astrid; Vorobjova, L.I.Прикладные вопросы биоорганического катализа1981 / с. 37-47 : илл https://www.ester.ee/record=b1345163*est https://digikogu.taltech.ee/et/Item/8ddb0fc6-18e7-45ab-baea-c94e3b5e53a6
  • Иммобилизация клеток микроорганизмов с аспартазной активностью. Соощение 3, Воздействие иммобилизации и физических факторов на селективность превращения фумарата аммония биомассой Escherichia coli K 12 и Propionibacterium shermaniiKalda, Astrid; Kala, A.; Köstner, AdoКинетические и технологические характеристики биокатализаторов1982 / с. 67-77 https://www.ester.ee/record=b1309223*est https://digikogu.taltech.ee/et/Item/e5bac84c-77da-4b4f-beba-795a822667c8
  • Использование "фекального коэффициента" при санитарной оценке водоемов (I сообщение)Leesment, Liidia; Murakas, H.; Laja, K.Сборник докладов седьмой научной конференции1970 / с. 202-204 https://www.ester.ee/record=b1362238*est
  • О бензилпенициллинацилазе (Escherichia coli), иммобилизованной в поликриламидном гелеKöstner, Ado; Kreen, Malle; Mandel, Mihkel; Kleiner, G.Микробиологическая промышленность : научно-технический реферативный сборник1973 / с. 1-4 : рис https://www.ester.ee/record=b2854511*est
  • О выделении и выживаемости энтеропатогенных эшерихий в с[у]точных водахLaja, K.; Leesment, Liidia; Murakas, H.Научная конференция, посвященная 75-летию кафедры гигиены Тартуского государственного университета и 30-летию Тартуской городской СЭС : [20-21 ноября 1970 г. : материалы]1970 / с. 103-106 http://hdl.handle.net/10062/47709 https://www.ester.ee/record=b1375229*est
  • Получение и свойства иммобилизованных нуклеозидфосфорилаз из E. COLIGajevaja, LjubovIII республиканская конференция молодых ученых-химиков, 15-17 мая 1979 года : тезисы докладов1979 / с.133-134 https://www.ester.ee/record=b1280470*est
  • Свойства иммобилизованных нуклеозидфосфорилаз из E.coliGajevaja, Ljubov; Köstner, Ado, juhendajaПолучение и свойства иммобилизованных ферментов1980 / с. 45-53 : илл https://www.ester.ee/record=b1344307*est https://digikogu.taltech.ee/et/Item/941191f5-8e17-4867-a354-18ae209ca577
  • Эксперты: причина загрязнения воды в Курессааре – ошибки при реконструкции канализационных трубrus.err.ee2025 https://rus.err.ee/1609635488/jeksperty-prichina-zagrjaznenija-vody-v-kuressaare-oshibki-pri-rekonstrukcii-kanalizacionnyh-trub