A new method of continuous cultivation with computer controlled change of dilution ratePaalme, Toomas; Vilu, RaivoProceedings of ICCAFT5/IFAC2-BIO2, Keystone, Colorado, April, 19921992 https://www.sciencedirect.com/science/article/pii/S1474667017503766

Absolute quantitative multi-omics characterization of specific growth rate-dependent metabolism of Escherichia coli = Absoluutselt kvantitatiivsetel oomikameetoditel põhinev kasvuerikiirusest sõltuva Escherichia coli metabolismi kirjeldamineValgepea, Kaspar2014 https://digi.lib.ttu.ee/i/?1089

Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growthMaser, Andres; Peebo, Karl; Nahku, RannoMicrobiology2019 / p. 37-46 : ill https://doi.org/10.1099/mic.0.000742 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Comparison and applications of label-free absolute proteome quantification methods on Escherichia coliArike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of proteomics2012 / p. 5437-5448 : ill https://pubmed.ncbi.nlm.nih.gov/22771841/

A conundrum of r-protein stability : unbalanced stoichiometry of r-proteins during stationary phase in Escherichia coliReier, Kaspar; Lahtvee, Petri-Jaan; Liiv, Aivar; Remme, JaanusmBio2022 / art. e01873-22 : ill https://doi.org/10.1128/mbio.01873-22 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coliPeebo, Karl; Valgepea, Kaspar; Nahku, Ranno; Riis, Gethe; Õun, Mikk; Adamberg, Kaarel; Vilu, RaivoApplied microbiology and biotechnology2014 / p. 5131-5143 : ill https://doi.org/10.1007/s00253-014-5613-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Corrigendum to: "Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli" [J Proteomics 75 (17) (2012) 5437-5448]Arike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of Proteomics2013 / p. 619 https://doi.org/10.1016/j.jprot.2013.07.012 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wastingValgepea, Kaspar; Adamberg, Kaarel; Vilu, RaivoBMC systems biology2011 / p. 106 https://pubmed.ncbi.nlm.nih.gov/21726468/

Detection of bioavailable heavy metals in EILATox-Oregon samples using whole-cell luminescent bacterial sensors in suspension or immobilized onto fibre-optic tipsHakkila, K.; Green, T.; Leskinen, P.; Ivask, Angela; Marks, R.; Virta, MarkoJournal of applied toxicology2004 / 5, p. 333-342 https://pubmed.ncbi.nlm.nih.gov/15478176/

Differential susceptibility of catheter biomaterials to biofilm-associated infections and their remedy by drug-encapsulated eudragit RL100 nanoparticlesPandey, Vivek Kumar; Srivastava, Kumar Rohit; Ajmal, Gufran; Thakur, Vijay Kumar; Gupta, Vijai Kumar; Upadhyay, Siddh Nath; Mishra, Pradeep KumarInternational Journal of Molecular Sciences2019 / Art. nr. 5110 https://doi.org/10.3390/ijms20205110 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Dissolution of silver nanowires and nanospheres dictates their toxicity to escherichia coliVisnapuu, Meeri; Joost, Urmas; Juganson, Katre; Künnis-Beres, Kai; Kahru, Anne; Kisand, Vambola; Ivask, AngelaBioMed Research International2013 / art. 819252 https://doi.org/10.1155/2013/819252 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Ekspert: Kuressaares tuleb ilmselt paar nädalat vett keeta, vanni minna ei soovitamaaleht.delfi.ee2023 Ekspert: Kuressaares tuleb ilmselt paar nädalat vett keeta, vanni minna ei soovita

Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteinsValgepea, Kaspar; Adamberg, Kaarel; Seiman, Andrus; Vilu, RaivoMolecular biosystems2013 / p. 2344-2358 : ill https://doi.org/10.1039/c3mb70119k Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteinsValgepea, Kaspar; Adamberg, Kaarel; Seiman, Andrus; Vilu, RaivoTÜ ja TTÜ doktorikool "Funktsionaalsed materjalid ja tehnoloogiad" : 04.-05. märts 2014, Tartu2014 / [1] p

Escherichia coli kultiveerimine raskel veelVanatalu, KaljuEMS 96 teaduskonverents, 6.-7. juuni 1996, Tallinn = EMS 96 Scientific Conference, 6-7 June 1996, Tallinn1996 / [1] p

Experts: Faulty construction led to Kuressaare's 2023 water contaminationerr.ee2025 https://news.err.ee/1609635455/experts-faulty-construction-led-to-kuressaare-s-2023-water-contamination

Fed-batch growth of auxotrophic E. coli in fully deuterated mediumVanatalu, KaljuInternational Union of Microbiological Societes, IUMS Congress '96. 8th International Congress of Bacteriology and Applied Microbiology Division. 8th International Congress of Mycology Division, Jerusalem, Israel, Aug. 18-23, 1996 : abstracts1996 / p. 14

Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth ratesEsquerré, Thomas; Moisan, Annick; Chiapello, Hélène; Arike, Liisa; Vilu, Raivo; Gaspin, Christine; Cocaign-Bousquet, Muriel; Girbal, LaurenceBMC Genomics2015 / art. 275 https://doi.org/10.1186/s12864-015-1482-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Identification and relative quantification of proteins in Escherichia coli proteome by “up-front” collision-induced dissociationArike, Liisa; Nahku, Ranno; Borissova, Maria; Adamberg, Kaarel; Vilu, RaivoEuropean journal of mass spectrometry2010 / 2, p. 227-235 https://pubmed.ncbi.nlm.nih.gov/20212332/

Identification and relative quantification of proteins in Esheria coli proteome using up-front CIDArike, LiisaNoSSS2009 : 5th Conference on Separation and Related Techniques by Nordic Separation Science Society : 26-29 August, 2009, Tallinn University of Technology, Estonia : abstract book and program2009 / p. 75

Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathwaysPey, Jon; Valgepea, Kaspar; Rubio, Angel; Beasley, John E; Planes, Francisco JavierBMC Systems Biology2013 / art. 134 https://doi.org/10.1186/1752-0509-7-134 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Kuressaare veereostuse eel ei tehtud läbipesu ega mõõtmisierr.ee2025 https://www.err.ee/1609635407/kuressaare-veereostuse-eel-ei-tehtud-labipesu-ega-mootmisi

Large-scale preparation of fully deuterated cell components. Ribosomes from Escherichia coli with high biological activityVanatalu, K.; Paalme, Toomas; Vilu, Raivo; Burkhardt, N.; Jünemann, R.; May, R.; Rühl, M.; Wadzack, J.; Nierhaus, K.H.European journal of biochemistry1993 / p. 315-321 https://febs.onlinelibrary.wiley.com/doi/10.1111/j.1432-1033.1993.tb18148.x

Lean-proteome strains - next step in metabolic engineeringValgepea, Kaspar; Peebo, Karl; Adamberg, Kaarel; Vilu, RaivoFrontiers in bioengineering and biotechnology2015 / p. 1-4 https://doi.org/10.3389/fbioe.2015.00011 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Levan enhances associated growth of Bacteroides, Escherichia, Streptococcus and Faecalibacterium in fecal microbiotaAdamberg, Kaarel; Tomson, Katrin; Talve, Tiina; Pudova, Ksenia; Puurand, Marju; Visnapuu, Triinu; Alamäe, Tiina; Adamberg, SignePLoS ONE2015 / p. 1-18 : ill https://doi.org/10.1371/journal.pone.0144042 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Motiliini ekspresseerimisest Escherichia coli'sTomson, Katrin; Vanatalu, K.XXVIII Eesti keemiapäevad : teaduskonverentsi ettekannete teesid = 28th Estonian Chemistry Days : abstracts of scientific conference2002 / lk. 141-142

A multifunctional strontium/silver-co-substituted hydroxyapatite derived from biogenic source as antibacterial biomaterialRessler, Antonia; Ivanković, Tomislav; Polak, Bruno; Ivanišević, Irena; Kovačić, Marin; Urlić, Inga; Hussainova, Irina; Ivanković, HrvojeCeramics International2022 / p. 18361 - 18373 https://doi.org/10.1016/j.ceramint.2022.03.095 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Nähtamatu koostöö: mikroplast tõstab bakterite vastupanuvõimetOlman, Triininovaator.err.ee2025 https://novaator.err.ee/1609719219/nahtamatu-koostoo-mikroplast-tostab-bakterite-vastupanuvoimet

Photocatalytic antibacterial activity of nano-TiO2 (anatase)-based thin films : effects on Escherichia coli cells and fatty acidsJoost, Urmas; Juganson, Katre; Visnapuu, Meeri; Mortimer, Monika; Kahru, Anne; Nõmmiste, Ergo; Joost, Urmeli; Kisand, Vambola; Ivask, AngelaJournal of photochemistry and photobiology B : biology2015 / p. 178-185 : ill https://doi.org/10.1016/j.jphotobiol.2014.12.010 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Pipes not flushed nor measurements taken before Kuressaare water pollutionnews.err.ee2025 https://news.err.ee/1609636163/pipes-not-flushed-nor-measurements-taken-before-kuressaare-water-pollution

Production of labelled recombinant proteins in fed-batch system in Escherchia coli = Märgistatud rekombinantsete valkude tootmine Escherichia coli fed-batch süsteemidesTomson, Katrin2007 https://www.ester.ee/record=b2324657*est

Proteome reallocation in Escherichia coli with increasing specific growth ratePeebo, Karl; Valgepea, Kaspar; Maser, Andres; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoMolecular biosystems2015 / p. 1184-1193 : ill https://doi.org/10.1039/c4mb00721b Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Quantitative proteomics of Escherichia coli : from relative to absolute scale = Kvantitatiivne Escherichia coli proteoomika : relatiivsetest numbritest absoluutsete kogusteniArike, Liisa2012 http://www.ester.ee/record=b2931221*est

Rannahooaeg läheneb vankumatu kiirusega – Stroomi ranna külastajatele on algavaks suveks üks hea ja üks halb uudis [Võrguväljaanne]Pau, Aivarforte.delfi.ee2021 "Rannahooaeg läheneb vankumatu kiirusega – Stroomi ranna külastajatele on algavaks suveks üks hea ja üks halb uudis"

Specific growth rate dependent transcriptiome profiling of Escherichia coli K12 MG1655 in accelerostat culturesNahku, Ranno; Valgepea, Kaspar; Lahtvee, Petri-Jaan; Erm, Sten; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoJournal of biotechnology2010 / 1, p. 60-65 https://www.sciencedirect.com/science/article/pii/S0168165609004726

Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous cultureNahku, Ranno; Peebo, Karl; Valgepea, Kaspar; Barrick, Jeffrey E.; Adamberg, Kaarel; Vilu, RaivoMicrobiology2011 / p. 2604-2610 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352173/

TalTechi ekspertuuring tuvastas Kuressaare veereostuse põhjusedehitusleht.ee2025 https://ehitusleht.ee/taltechi-ekspertuuring-tuvastas-kuressaare-veereostuse-pohjused/

The growth rate control in Escherichia coli at near to maximum growth rates : the A-stat approachPaalme, Toomas; Elken, R.; Kahru, Anne; Vanatalu, Kalju; Vilu, RaivoAntonie van Leeuwenhoek journal of microbiology1997 / p. 217-230: ill

The transcription factor network of E. coli steers global responses to shifts in RNAP concentrationAlmeida, Bilena L.B.; Bahrudeen, Mohamed N. M.; Chauhan, Vatsala; Dash, Suchintak; Kandavalli, Vinodh; Häkkinen, Antti; Lloyd-Price, Jason; Cristina, Palma S. D.; Baptista, Ines S. C.; Smolander, Olli-PekkaNucleic acids research2022 / p. 6801-6819 https://doi.org/10.1093/nar/gkac540 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

uCARE Chem Suite and uCAREChemSuiteCLI : tools for bacterial resistome predictionSaha, Saurav Bhaskar; Gupta, Vijai Kumar; Ramteke, Pramod WasudeoGenes and Diseases2021 / p. 721 - 729 https://doi.org/10.1016/j.gendis.2020.06.008 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Vee kvaliteet [Võrguteavik] : Escherichia coli ja coli-laadsete bakterite loendamine. Osa 1, Membraanfiltreerimise meetod madala bakteriaalse fooniga veele = Water quality : enumeration of Escherichia coli and coliform bacteria. Part 1, Membrane filtration method for waters with low bacterial background flora (ISO 9308-1:2014+ISO 9308-1:2014/Amd 1:2016)2017 https://www.ester.ee/record=b4652098*est

Vee kvaliteet [Võrguteavik] : Escherichia coli ja coli-laadsete bakterite loendamine. Osa 1, Membraanfiltreerimise meetod madala bakteriaalse fooniga veele = Water quality : enumeration of Escherichia coli and coliform bacteria. Part 1, Membrane filtration method for waters with low bacterial background flora (ISO 9308-1:2014)2015 http://www.ester.ee/record=b4502748*est

Адаптация E coli к различным температурам морской водыAlton, Leelo-SiiriПроблемы современной экологии. [1] : исследования природных экосистем Эстонии : материалы республиканской конференции, проведенной с 11 по 13 декабря 1978 г., [в Тарту] = Problems of contemporary ecology : researches into Estonian natural ecosystems : abstracts of the republican confrerence held in Tartu, from 11 to 13 December, 19781978 / с. 117-118 https://www.ester.ee/record=b1314403*est

Иммобилизация клеток микроорганизмов с аспартазной активностью. II, Иммобилизация клеток Escherichia coliKalda, Astrid; Vorobjova, L.I.Прикладные вопросы биоорганического катализа1981 / с. 37-47 : илл https://www.ester.ee/record=b1345163*est https://digikogu.taltech.ee/et/Item/8ddb0fc6-18e7-45ab-baea-c94e3b5e53a6

Иммобилизация клеток микроорганизмов с аспартазной активностью. Соощение 3, Воздействие иммобилизации и физических факторов на селективность превращения фумарата аммония биомассой Escherichia coli K 12 и Propionibacterium shermaniiKalda, Astrid; Kala, A.; Köstner, AdoКинетические и технологические характеристики биокатализаторов1982 / с. 67-77 https://www.ester.ee/record=b1309223*est https://digikogu.taltech.ee/et/Item/e5bac84c-77da-4b4f-beba-795a822667c8

Использование "фекального коэффициента" при санитарной оценке водоемов (I сообщение)Leesment, Liidia; Murakas, H.; Laja, K.Сборник докладов седьмой научной конференции1970 / с. 202-204 https://www.ester.ee/record=b1362238*est

О бензилпенициллинацилазе (Escherichia coli), иммобилизованной в поликриламидном гелеKöstner, Ado; Kreen, Malle; Mandel, Mihkel; Kleiner, G.Микробиологическая промышленность : научно-технический реферативный сборник1973 / с. 1-4 : рис https://www.ester.ee/record=b2854511*est

О выделении и выживаемости энтеропатогенных эшерихий в с[у]точных водахLaja, K.; Leesment, Liidia; Murakas, H.Научная конференция, посвященная 75-летию кафедры гигиены Тартуского государственного университета и 30-летию Тартуской городской СЭС : [20-21 ноября 1970 г. : материалы]1970 / с. 103-106 http://hdl.handle.net/10062/47709 https://www.ester.ee/record=b1375229*est

Получение и свойства иммобилизованных нуклеозидфосфорилаз из E. COLIGajevaja, LjubovIII республиканская конференция молодых ученых-химиков, 15-17 мая 1979 года : тезисы докладов1979 / с.133-134 https://www.ester.ee/record=b1280470*est

Свойства иммобилизованных нуклеозидфосфорилаз из E.coliGajevaja, Ljubov; Köstner, Ado, juhendajaПолучение и свойства иммобилизованных ферментов1980 / с. 45-53 : илл https://www.ester.ee/record=b1344307*est https://digikogu.taltech.ee/et/Item/941191f5-8e17-4867-a354-18ae209ca577

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