• Absolute quantification of viable bacteria abundances in food by next-generation sequencing : quantitative NGS of viable microbesKallastu, Aili; Malv, Esther; Aro, Valter; Meikas, Anne; Vendelin, Mariann; Kattel, Anna; Nahku, Ranno; Kazantseva, JekaterinaCurrent Research in Food Science2023 / art. 100443 https://doi.org/10.1016/j.crfs.2023.100443 https://www.scopus.com/sourceid/21101022831 https://www.scopus.com/record/display.uri?eid=2-s2.0-85146278019&origin=resultslist&sort=plf-f&src=s&sid=ab6af771262882a740025f59d1076392&sot=b&sdt=b&s=TITLE-ABS-KEY%28%22Absolute+quantification+of+viable+bacteria+abundances+in+food+by+next-generation+sequencing%3A+Quantitative+NGS+of+viable+microbes%22%29&sl=84&sessionSearchId=ab6af771262882a740025f59d1076392&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=CURR%20RES%20FOOD%20SCI&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000974516900001
• Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rateMaser, Andres; Peebo, Karl; Vilu, Raivo; Nahku, RannoResearch in microbiology2020 / p. 185−193 https://doi.org/10.1016/j.resmic.2020.02.001 https://www.scopus.com/sourceid/20354 https://www.scopus.com/record/display.uri?eid=2-s2.0-85080063384&origin=inward&txGid=3cc1290c80daf213210eec1b31600a78 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=RES%20MICROBIOL&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000552375000004
• Avoiding amino acid depletion in a complex medium results in improved Escherichia coli BW25113 growthMaser, Andres; Peebo, Karl; Nahku, RannoMicrobiology2019 / p. 37-46 : ill https://doi.org/10.1099/mic.0.000742 https://www.scopus.com/sourceid/20268 https://www.scopus.com/record/display.uri?eid=2-s2.0-85059496868&origin=inward&txGid=243063df9285c9213158c404e705b4ec https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MICROBIOL-SGM&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000462254100005
• Co-culture process development using individual substratesKattel, Anna; Morell, Indrek; Aro, Valter; Nahku, Ranno; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 28
• Comparison and applications of label-free absolute proteome quantification methods on Escherichia coliArike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of proteomics2012 / p. 5437-5448 : ill https://pubmed.ncbi.nlm.nih.gov/22771841/
• Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coliPeebo, Karl; Valgepea, Kaspar; Nahku, Ranno; Riis, Gethe; Õun, Mikk; Adamberg, Kaarel; Vilu, RaivoApplied microbiology and biotechnology2014 / p. 5131-5143 : ill https://doi.org/10.1007/s00253-014-5613-y https://www.scopus.com/sourceid/14957 https://www.scopus.com/record/display.uri?eid=2-s2.0-84901685293&origin=inward&txGid=d79d12b3679b0b8b7f83c15c2f0f55ab https://jcr.clarivate.com/jcr-jp/journal-profile?journal=APPL%20MICROBIOL%20BIOT&year=2014 https://www.webofscience.com/wos/woscc/full-record/WOS:000336268900031
• Corrigendum to: "Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli" [J Proteomics 75 (17) (2012) 5437-5448]Arike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of Proteomics2013 / p. 619 https://doi.org/10.1016/j.jprot.2013.07.012 https://www.scopus.com/sourceid/11700154304 https://www.scopus.com/record/display.uri?eid=2-s2.0-84890607302&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1016%2Fj.jprot.2013.07.012%29&sessionSearchId=08e7c58f88aea92900d731f06ee215ed https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20PROTEOMICS&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000327906000049
• Detailed analysis of metabolism reveals growth-rate-promoting interactions between Anaerostipes caccae and Bacteroides sppKattel, Anna; Morell, Indrek; Aro, Valter; Lahtvee, Petri-Jaan; Vilu, Raivo; Jõers, Arvi; Nahku, RannoAnaerobe2023 / art. 102680 https://doi.org/10.1016/j.anaerobe.2022.102680 https://www.scopus.com/sourceid/19607 https://www.scopus.com/record/display.uri?eid=2-s2.0-85145564420&origin=inward&txGid=ebda0f96b6e9faed29ac3ce73a34a365 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=ANAEROBE&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000930620000004
• Development of consortia bioprocesses for efficient production of probioticsNahku, Ranno; Aro, Valter; Kattel, Anna; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 42
• Evaluating the effect of different fibers on a simplified gut microbiotaAro, Valter; Kattel, Anna; Nahku, Ranno; Viiard, Ene; Vilu, Raivo14th Baltic Conference on Food Science and Technology "Sustainable Food for Conscious Consumer" : FoodBalt 2021 : book of abstracts2021 / p. 19 https://tftak.eu/foodbalt/assets/files/Foodbalt_Book_of_Abstracs.pdf
• Exploring the resilience and stability of a defined human gut microbiota consortium : an isothermal microcalorimetric studyKattel, Anna; Aro, Valter; Lahtvee, Petri-Jaan; Kazantseva, Jekaterina; Jõers, Arvi; Nahku, Ranno; Belouah, IsmaMicrobiologyOpen2024 / art. e1430 https://doi.org/10.1002/mbo3.1430
• Identification and relative quantification of proteins in Escherichia coli proteome by “up-front” collision-induced dissociationArike, Liisa; Nahku, Ranno; Borissova, Maria; Adamberg, Kaarel; Vilu, RaivoEuropean journal of mass spectrometry2010 / 2, p. 227-235 https://pubmed.ncbi.nlm.nih.gov/20212332/
• Metabolic Characterization and Composition Control of Next Generation Probiotic Consortia = Uue põlvkonna probiootiliste koosluste koostise kontroll ja metaboolne iseloomustusKattel, Anna2025 https://www.ester.ee/record=b5757724*est https://digikogu.taltech.ee/et/Item/941c22f1-d30b-4f28-97fd-feafc2b2ebec https://doi.org/10.23658/taltech.62/2025
• Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth ratesLahtvee, Petri-Jaan; Adamberg, Kaarel; Arike, Liisa; Nahku, Ranno; Aller, Kadri; Vilu, RaivoMicrobial cell factories2011 / Article no. 12 https://microbialcellfactories.biomedcentral.com/articles/10.1186/1475-2859-10-12
• Proteome reallocation in Escherichia coli with increasing specific growth ratePeebo, Karl; Valgepea, Kaspar; Maser, Andres; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoMolecular biosystems2015 / p. 1184-1193 : ill https://doi.org/10.1039/c4mb00721b https://www.scopus.com/sourceid/145703 https://www.scopus.com/record/display.uri?eid=2-s2.0-84925014516&origin=inward&txGid=ba40d0eaec286dc5bf908cf06818627f https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MOL%20BIOSYST&year=2015 https://www.webofscience.com/wos/woscc/full-record/WOS:000351493300019
• The quantitative measurement of peptidoglycan components obtained from acidic hydrolysis in gram-positive and gram-negative bacteria via hydrophilic interaction liquid chromatography coupled with mass spectrometryPismennõi, Dmitri; Kattel, Anna; Belouah, Isma; Nahku, Ranno; Vilu, Raivo; Kobrin, Eeva-GerdaMicroorganisms2023 / art. 2134, 13 p. : ill https://doi.org/10.3390/microorganisms11092134 https://www.scopus.com/sourceid/21100933947 https://www.scopus.com/record/display.uri?eid=2-s2.0-85172802858&origin=inward&txGid=f290445664baf9ab3a9e8cddfafad517 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MICROORGANISMS&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001075105600001
• Specific growth rate dependent transcriptiome profiling of Escherichia coli K12 MG1655 in accelerostat culturesNahku, Ranno; Valgepea, Kaspar; Lahtvee, Petri-Jaan; Erm, Sten; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoJournal of biotechnology2010 / 1, p. 60-65 https://www.sciencedirect.com/science/article/pii/S0168165609004726
• Steady state growth space study of Lactococcus lactis in D-stat culturesLahtvee, Petri-Jaan; Valgepea, Kaspar; Nahku, Ranno; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoAntonie van Leeuwenhoek2009 / 4, p. 487-496 https://pubmed.ncbi.nlm.nih.gov/19603284/
• Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous cultureNahku, Ranno; Peebo, Karl; Valgepea, Kaspar; Barrick, Jeffrey E.; Adamberg, Kaarel; Vilu, RaivoMicrobiology2011 / p. 2604-2610 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352173/
• Systems biology approach reveals that overflow metabolism of acetate in Escheria coli is triggered by carbon catabolite repression of acetyl-CoA synthetaseValgepea, Kaspar; Adamberg, Kaarel; Nahku, Ranno; Lahtvee, Petri-Jaan; Arike, Liisa; Vilu, RaivoBMC systems biology2010 / p. 166 https://pubmed.ncbi.nlm.nih.gov/21122111/
• Validation of critical factors for the quantitative characterization of bacterial physiology in accelerostat cultures = Kriitiliste faktorite valideerimine bakterite füsioloogia uurimiseks akselerostaatsetes kultiveerimiseksperimentidesNahku, Ranno2012