The absence of active creatine kinase system influences cardiac calcium handlingLaasmaa, Martin; Branovets, Jelena; Karro, Niina; Birkedal Nielsen, Rikke; Vendelin, MarkoBiophysical journal2019 / Poster 484 ; p. 96a https://doi.org/10.1016/j.bpj.2018.11.558

Albumin affects the stability, oligomerization and ligand interactions of lipoprotein lipaseRisti, Robert; Gunn, Kathryn H.; Hiis-Hommuk, Kristofer; Seeba, Natjan-Naatan; Villo, Ly; Vendelin, Marko; Neher, Saskia B.; Lõokene, AivarAtherosclerosis2022 / p. 68 https://doi.org/10.1016/j.atherosclerosis.2022.06.428

Albumin and heparin together or separately — different outcome on lipoprotein lipaseoligomerization and stabilityRisti, Robert; Gunn, K.; Villo, Ly; Hiis-Hommuk, Kristofer; Seeba, Natjan-Naatan; Karimi, Hamed; Vendelin, Marko; Neher, Saskia B.; Lõokene, AivarFEBS Open Bio2023 / p. 223 https://doi.org/10.1002/2211-5463.13646

Altered calcium handling in cardiomyocytes from arginine-glycine amidinotransferase-knockout mice is rescued by creatineLaasmaa, Martin; Branovets, Jelena; Barsunova, Karina; Karro, Niina; Lygate, Craig A.; Birkedal Nielsen, Rikke; Vendelin, MarkoAmerican journal of physiology-heart and circulatory physiology2020 / p. H805-H825 https://doi.org/10.1152/ajpheart.00300.2020 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Analysis of molecular movement reveals latticelike obstructions to diffusion in heart muscle cellsIllaste, Ardo; Laasmaa, Martin; Peterson, Pearu; Vendelin, MarkoBiophysical journal2012 / p. 739-748 : ill https://www.sciencedirect.com/science/article/pii/S0006349512000859

Analysis of molecular movements in cardiac myocytes = Molekulaarsete liikumiste analüüs südamelihasrakkudesIllaste, Ardo2012 https://digi.lib.ttu.ee/i/?648

Bidirectionality and compartmentation of metabolic fluxes are revealed in the dynamics of isotopomer networksSchryer, David; Peterson, Pearu; Paalme, Toomas; Vendelin, MarkoInternational journal of molecular sciences2009 / 4, p. 1697-1718 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680642/

Biofüüsikud loodavad südamerakkude segadusse ajamisega haigusi ennetadaAlvela, Ainnovaator.err.ee2023 Biofüüsikud loodavad südamerakkude segadusse ajamisega haigusi ennetada

Cardiac dynamics involving arrhythmias and continuum mechanicsEngelbrecht, Jüri; Vendelin, Marko; Kongas, Olav; Hertzen, R. vonTrends in continuum physics TRECOP 981999 / p. 113-118

Cardiac expression and location of hexokinase changes in a mouse model of pure creatine deficiencyBranovets, Jelena; Karro, Niina; Barsunova, Karina; Laasmaa, Martin; Lygate, Craig A.; Vendelin, Marko; Birkedal Nielsen, RikkeAmerican journal of physiology-heart and circulatory physiology2021 / p. H613−H629 https://doi.org/10.1152/ajpheart.00188.2020 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Cardiac mechanoenergetics in silicoVendelin, Marko2001 http://www.ester.ee/record=b1556271*est

Cardiac muscle regulatory units are predicted to interact stronger than neighboring cross-bridgesKalda, Mari; Vendelin, MarkoScientific reports2020 / art. 5530, 13 p. : ill https://doi.org/10.1038/s41598-020-62452-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Cardiac muscle regulatory units are predicted to interact stronger than neighboring cross-bridgesKalda, Mari; Vendelin, MarkoBiophysical journal2018 / p. 549a https://doi.org/10.1016/j.bpj.2017.11.2998

Cardiomyocytes from female compared to male mice have larger ryanodine receptor clusters and higher calcium spark frequencyLaasmaa, Martin; Branovets, Jelena; Stolova, Jekaterina; Shen, Xin; Rätsepso, Triinu; Balodis, Mihkel Jaan; Grahv, Cärolin; Hendrikson, Eliise; Louch, William Edward; Birkedal Nielsen, Rikke; Vendelin, MarkoThe journal of physiology2023 / p. 4033-4052 : ill https://doi.org/10.1113/JP284515

Cellprofiler is a fit tool for droplet digital image analysisBartkova, Simona; Vendelin, Marko; Pata, Pille; Scheler, Ott23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2019) Basel, Switzerland, 27 – 31 October 20192020 / art. 163704, p. 1644-1645 https://doi.org/10.1101/811869

Combined action of albumin and heparin regulates lipoprotein lipase oligomerization, stability, and ligand interactionsRisti, Robert; Gunn, Kathryn H.; Hiis-Hommuk, Kristofer; Seeba, Natjan-Naatan; Karimi, Hamed; Villo, Ly; Vendelin, Marko; Neher, Saskia B.; Lõokene, AivarPLoS ONE2023 / art. e0283358, 24 p. : ill https://doi.org/10.1371/journal.pone.0283358

Compromised creatine kinase energy transfer leads to adaptations in cardiacexcitation-contraction coupling that are distinct from changes associated with heart failure : [manuscript]Branovets, Jelena; Kalda, Mari; Laasmaa, Martin; Stolova, Jekaterina; Shen, Xin; Balodis, Mihkel Jaan; Grahv, Cärolin; Hendrikson, Eliise; Louch, William Edward; Birkedal Nielsen, Rikke; Vendelin, Marko2022

Cross-bridge group ensembles describing cooperativity in thermodynamically consistent wayKalda, Mari; Peterson, Pearu; Vendelin, MarkoPLoS ONE2015 / p. 1-26 : ill https://doi.org/10.1371/journal.pone.0137438

Cross-bridge group ensembles describing cooperativity in thermodynamically consistent wayKalda, Mari; Peterson, Pearu; Vendelin, MarkoBiophysical journal2016 / p. 463a https://doi.org/10.1016/j.bpj.2015.11.2481

Droplet image analysis with user-friendly freeware CellProfilerBartkova, Simona; Vendelin, Marko; Sanka, Immanuel; Pata, Pille; Scheler, OttAnalytical methods2020 / p. 2287-2294 : ill https://doi.org/10.1039/D0AY00031K Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Energy-efficiency of cardiomyocyte stimulation with rectangular pulsesLaasmaa, Martin; Lu, Pengfei; Veletic, Mladen; Louch, William Edward; Bergsland, Jacob; Balasingham, Ilangko; Vendelin, MarkoScientific reports2019 / art. 13307, p. 1−9 https://doi.org/10.1038/s41598-019-49791-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Estimation of diffusion restrictions in cardiomyocytes using kinetic measurements = Difusioonitakistuste hindamine kardiomüotsüütides kasutades kineetilisi mõõtmisiSepp, Mervi2013 https://www.ester.ee/record=b2987727*est

Heterogeneity of diffusion restrictions in cardiomyocytes = Difusioonitakistuste heterogeensus südamelihasrakkudesJepihhina, Natalja2017 https://digi.lib.ttu.ee/i/?8085

The influence of alternative energy transfer systems on respiration in creatine-deficient mouse cardiomyocytesBranovets, Jelena; Jugai, Svetlana; Vendelin, Marko; Birkedal Nielsen, RikkeBiophysical journal2016 / p. 474a-475a https://doi.org/10.1016/j.bpj.2015.11.2538

Intracellular compartmentalization shapes energy transfer – differences betweenadenylate kinase activities in homogenate and permeabilized cardiomyocytes : [manuscript]Branovets, Jelena; Vendelin, Marko; Birkedal Nielsen, Rikke2022

Intracellular diffusion of adenosine phosphates is locally restricted in cardiac muscleVendelin, Marko; Eimre, Margus; Seppet, Evelin; Peet, Nadežda; Andrienko, Tatiana; Lemba, Maris; Engelbrecht, Jüri; Seppet, Enn; Saks, ValdurMolecular and cellular biochemistry2004 / p. 229-241 : ill

IOCBIO Kinetics : an open-source software solution for analysis of data tracesVendelin, Marko; Laasmaa, Martin; Kalda, Mari; Branovets, Jelena; Karro, Niina; Barsunova, Karina; Birkedal Nielsen, RikkePLoS computational biology2020 / art. e1008475 https://doi.org/10.1371/journal.pcbi.1008475 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

IOCBIO Sparks detection and analysis softwareLaasmaa, Martin; Karro, Niina; Birkedal Nielsen, Rikke; Vendelin, MarkoBiophysical journal2019 / art. 1900-Pos ; p. 384a https://doi.org/10.1016/j.bpj.2018.11.2080

IOCBIO Sparks detection and analysis softwareLaasmaa, Martin; Karro, Niina; Birkedal Nielsen, Rikke; Vendelin, MarkoPeerJ2019 / art. e6652, 28 p. : ill https://doi.org/10.7717/peerj.6652 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Isotopomeric 13C labeling of amino acids reveal compartmentation in Saccharomyces uvarumSchryer, David; Peterson, Pearu; Paalme, Toomas; Vendelin, MarkoBiophysical journal2009 / 3, Supplement 1, p. 308a

Kahe tuhande kaheksanda aasta teaduspreemia geo- ja bioteaduste alal tööde tsükli "Molekulaarne süsteemne bioenergeetika" eest : [Valdur Saks (kollektiivi juht), Jüri Engelbrecht, Enn Seppet, Marko Vendelin]Saks, Valdur; Engelbrecht, Jüri; Seppet, Enn; Vendelin, MarkoTeadusmõte Küberneetika Instituudis2010 / lk. 120-130 : ill

Linear dependence of myocardium oxygen consumption on stress-strain area predicted by cross-bridge modelVendelin, Marko; Bovendeerd, Peter; Arts, Theo; Engelbrecht, Jüri; Campen, Dick H. vanMedical & biological engineering & computing1999 / Suppl. 1, Proceedings of the 11th Nordic-Baltic Conference on Biomedical Engineering, June 6-10, 1999, Tallinn, Estonia, p. 63-66: ill

Marker enzyme activities in hindleg from creatine-deficient AGAT and GAMT KO mice - differences between models, muscles, and sexesBarsunova, Karina; Vendelin, Marko; Birkedal Nielsen, RikkeScientific reports2020 / Art. 7956, 9 p https://doi.org/10.1038/s41598-020-64740-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Mechanoenergetics of a single cardiomyocyte = Ühe südameraku mehaanoenergeetikaKalda, Mari2015

Metabolic compartmentation in rainbow trout cardiomyocytes : coupling of hexokinase but not creatine kinase to mitochondrial respirationKarro, Niina; Sepp, Mervi; Jugai, Svetlana; Laasmaa, Martin; Vendelin, Marko; Birkedal Nielsen, RikkeJournal of comparative physiology B2017 / p. 103-116 : ill https://doi.org/10.1007/s00360-016-1025-x

Metabolic flux analysis of compartmentalized systems using dynamic isotopologue modeling = Isotopoloogilise modelleerimise rakendamine heterogeensete bioloogiliste süsteemide ainevahetusvoo analüüsisSchryer, David2012 https://www.ester.ee/record=b2776763*est

Microstructure described by hierarchical internal variablesEngelbrecht, Jüri; Vendelin, MarkoRendiconti del Seminario Matematico (Università e Politecnico di Torino)2000 / 83-91

Modeling of the coupled enzyme systems : model of mitochondrial creatine kinase (miCK) and adenine nucleotide translocase (ANT) couplingVendelin, Marko; Anmann, Tiia; Käämbre, Tuuli; Sikk, Peeter; Saks, ValdurBiophysical Society meeting abstracts : Biophysical journal supplement2007 / p. 660A

Molecular dynamics simulations of creatine kinase and adenine nucleotide translocase in mitochondrial membrane patchKaro, Jaanus; Peterson, Pearu; Vendelin, MarkoThe journal of biological chemistry2012 / p. 7467-7476 : ill https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3293576/

Molekulaarne süsteemne bioenergeetika : kommentaar Eesti Vabariigi teaduse aastapreemia pälvinud tööde tsüklileSaks, Valdur; Engelbrecht, Jüri; Seppet, Enn; Vendelin, MarkoTallinna Tehnikaülikooli aastaraamat 20082009 / lk. 291-298 : ill

Multi-nodal nano-actuator pacemaker for energy-efficient stimulation of cardiomyocytesLu, Pengfei; Veletic, Mladen; Laasmaa, Martin; Vendelin, MarkoNano Communication Networks2019 / art. 100270, 11 p. : ill https://doi.org/10.1016/j.nancom.2019.100270 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Number of open mitochondrial voltage-dependent anion channels and intracellular diffusion coefficient in heart muscleSimson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Branovets, Jelena; Peterson, Pearu; Birkedal Nielsen, Rikke; Vendelin, MarkoBiophysical journal2016 / p. 475a https://doi.org/10.1016/j.bpj.2015.11.2540

On the complexity of signal propagation in nerve fibresEngelbrecht, Jüri; Peets, Tanel; Tamm, Kert; Laasmaa, Martin; Vendelin, MarkoProceedings of the Estonian Academy of Sciences2018 / p. 28-38 : ill https://doi.org/10.3176/proc.2017.4.28 http://www.ester.ee/record=b2355998*est Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Ontogeny of cardiomyocytes : ultrastructure optimization to meet the demand for tight communication in excitation–contraction coupling and energy transferBirkedal Nielsen, Rikke; Laasmaa, Martin; Branovets, Jelena; Vendelin, MarkoPhilosophical Transactions of the Royal Society B : Biological Sciences2022 / art. 20210321 https://doi.org/10.1098/rstb.2021.0321 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Optimizing ventricular fibers : uniform strain or stress, but not ATP consumption, leads to high efficiencyVendelin, Marko; Bovendeerd, Peter; Engelbrecht, Jüri; Arts, TheoAmerican journal of physiology - heart and circulatory physiology2002 / p. H1072-H1081 : ill

Rat and mouse cardiomyocytes show subtle differences in creatine kinase expression and compartmentalizationBranovets, Jelena; Soodla, Kärol; Vendelin, Marko; Birkedal Nielsen, RikkePLoS ONE2023 / art. e0294718 https://doi.org/10.1371/journal.pone.0294718

Real-time determination of sarcomere length of a single cardiomyocyte during contractionPeterson, Pearu; Kalda, Mari; Vendelin, MarkoAmerican journal of physiology - cell physiology2013 / p. C519-C531 : ill

Respiration of permeabilized cardiomyocytes from mice: no sex differences, but substrate-dependent changes in the apparent ADP-affinityKarro, Niina; Laasmaa, Martin; Vendelin, Marko; Birkedal Nielsen, RikkeScientific reports2019 / art. 12592 https://doi.org/10.1038/s41598-019-48964-x Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Restricted ADP movement in cardiomyocytes : cytosolic diffusion obstacles are complemented with a small number of open mitochondrial voltage-dependent anion channelsSimson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Peterson, Pearu; Birkedal Nielsen, Rikke; Vendelin, MarkoJournal of molecular and cellular cardiology2016 / p. 197-203 : ill https://doi.org/10.1016/j.yjmcc.2016.04.012

Revealing aspects of cardiac function from fluorescence and electrophysiological recordings = Südametalituse uuringud fluorestsentsi ja elektrofüsioloogiliste mõõtmiste abilLaasmaa, Martin2016 http://www.ester.ee/record=b4632325*est https://digikogu.taltech.ee/et/Item/5e9f5bd2-8295-4f7e-8f6d-65d0b8002a74

Revealing calcium fluxes by analyzing inhibition dynamics in action potential clampLaasmaa, Martin; Birkedal Nielsen, Rikke; Vendelin, MarkoJournal of molecular and cellular cardiology2016 / p. 93-108 : ill http://dx.doi.org/10.1016/j.yjmcc.2016.08.015

Scaled microstructure and internal variablesEngelbrecht, Jüri; Vendelin, MarkoAbstract book : Finno-Ugric International Conference on Mechanics : FUDOM 2001, May 27-June 2, Rackeve/Budapest, Hungary2001 / ? p

Sensitivity analysis of flux determination in heart by H(2) (18)O-provided labeling using a dynamic isotopologue model of energy transfer pathwaysSchryer, David; Peterson, Pearu; Illaste, Ardo; Vendelin, MarkoPLoS computational biology2012 / p. e1002795, 1-15 : ill

SüdameasjadLemba, Maris; Kongas, Olav; Vendelin, MarkoNoored teaduses2000 / lk. 62-66 : portr https://artiklid.elnet.ee/record=b2111022*est

Südameraku sisestruktuuri uurimine molekulaarse müra abilSimson, Päivo; Vendelin, MarkoTallinna Tehnikaülikooli aastaraamat 20132014 / lk. 253-256

Süsteemne lähenemine aitab mõista ka inimese südant : [intervjuu Marko Vendelin'iga]Vendelin, MarkoTeadusmõte Küberneetika Instituudis2010 / lk. 164-166 : portr

Teaduspreemia geo- ja bioteaduste alal tööde tsükli "Molekulaarne süsteemne bioenergeetika" eest : Valdur Saks (kollektiivi juht), Jüri Engelbrecht, Enn Seppet, Marko VendelinSaks, Valdur; Engelbrecht, Jüri; Seppet, Enn; Vendelin, MarkoEesti Vabariigi teaduspreemiad 20082008 / lk. 110-123 : fot., ill

Tight Coupling of Na+/K+-ATPase with glycolysis demonstrated in permeabilized rat cardiomyocytesSepp, Mervi; Sokolova, Niina; Jugai, Svetlana; Mandel, Merle; Peterson, Pearu; Vendelin, MarkoPLoS ONE2014 / art. e99413 https://doi.org/10.1371/journal.pone.0099413

Unchanged mitochondrial organization and compartmentation of high-energy phosphates in creatine-deficient GAMT(-/-) mouse heartsBranovets, Jelena; Sepp, Mervi; Kotlyarova, Svetlana; Jepihhina, Natalja; Sokolova, Niina; Aksentijevic, Dunja; Neubauer, Stefan; Lygate, Craig A.; Vendelin, Marko; Birkedal Nielsen, RikkeAmerican journal of physiology - heart and circulatory physiology2013 / p. H506-H520 : ill https://doi.org/10.1152/ajpheart.00919.2012

Using action potential clamp data to determine the calcium fluxes and contributions in excitation-contraction coupling in vivo in cardiomyocytesLaasmaa, Martin; Vendelin, Marko; Birkedal Nielsen, RikkeBiophysical journal2016 / p. 100a-101a http://dx.doi.org/10.1016/j.bpj.2015.11.600

Uued inimesed ja positsioonidTammet, Tanel; Uska, Riina; Laanearu, Janek; Tabri, Kristjan; Vendelin, Marko; Margus, Madis; Kindsigo, Merit; Talpsepp, Tõnn; Tähemaa, Toivo; Laos, Katrin; Liiv, Innar; Rüütmann, Tiia; Sarapuu, Külli; Kikkas, Kaido; Pachel, KarinMente et Manu2022 / lk. 40-49 : fot https://www.ester.ee/record=b1242496*est