Comparison and applications of label-free absolute proteome quantification methods on Escherichia coliArike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of proteomics2012 / p. 5437-5448 : ill https://pubmed.ncbi.nlm.nih.gov/22771841/

A conundrum of r-protein stability : unbalanced stoichiometry of r-proteins during stationary phase in Escherichia coliReier, Kaspar; Lahtvee, Petri-Jaan; Liiv, Aivar; Remme, JaanusmBio2022 / art. e01873-22 : ill https://doi.org/10.1128/mbio.01873-22 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Deciphering the omics of plant-microbe interaction: perspectives and new insightsSharma, Minaxi; Sudheer, Surya; Usmani, Zeba; Rani, Rupa; Gupta, PratishthaCurrent genomics2020 / p. 343-362 https://doi.org/10.2174/1389202921999200515140420 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Evaluation of enzyme-constrained genome-scale model through metabolic engineering of anaerobic co-production of 2,3-butanediol and glycerol by Saccharomyces cerevisiaeSjöberg, Gustav; Reķena, Alina; Fornstad, Matilda; Lahtvee, Petri-Jaan; Van Maris, Antionius J. A.Metabolic engineering2024 / p. 49-59 https://doi.org/10.1016/j.ymben.2024.01.007

Functional characterization of the cellular copper proteome = Rakulise vase proteoomi funtsionaalne iseloomustamineZovo, Kairit2011

Genome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloidesReķena, Alina; Pinheiro, Marina J.; Bonturi, Nemailla; Belouah, Isma; Tammekivi, Eliise; Herodes, Koit; Kerkhoven, Eduard J.; Lahtvee, Petri-JaanPLoS computational biology2023 / art. e1011009 https://doi.org/10.1371/journal.pcbi.1011009

Genoomika, proteoomika... ehk kuhu liigub bioloogiateadus?Palumaa, PeepTallinna Tehnikaülikooli aastaraamat 20032004 / lk. 18-22

Identification and relative quantification of proteins in Escherichia coli proteome by “up-front” collision-induced dissociationArike, Liisa; Nahku, Ranno; Borissova, Maria; Adamberg, Kaarel; Vilu, RaivoEuropean journal of mass spectrometry2010 / 2, p. 227-235 https://pubmed.ncbi.nlm.nih.gov/20212332/

Integrated transcriptomic, proteomic, and metabolomics analysis reveals peel ripening of harvested banana under natural conditionYun, Ze; Li, Taotao; Gao, Huijun; Zhu, Hong; Gupta, Vijai Kumar; Jiang, Yueming; Duan, XuewuBiomolecules2019 / Art. nr. 167 https://doi.org/10.3390/biom9050167 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Lean-proteome strains - next step in metabolic engineeringValgepea, Kaspar; Peebo, Karl; Adamberg, Kaarel; Vilu, RaivoFrontiers in bioengineering and biotechnology2015 / p. 1-4 http://dx.doi.org/10.3389/fbioe.2015.00011

The need for an integrated multi-OMICs approach in microbiome science in the food systemFerrocino, Ilario; Rantsiou, Kalliopi; McClure, Ryan; Kostic, Tanja; Correa de Souza, Rafael Soares; Lange, Lene; FitzGerald, Jamie; Kriaa, Aicha; Sarand, IngaComprehensive Reviews in Food Science and Food Safety2023 / p. 1082-1103 https://doi.org/10.1111/1541-4337.13103

New approaches in capillary electrophoresis for separation and study of proteins = Kapillaarelektroforeesi uued lahendused valkude lahutamisel ja uurimiselKnjazeva, Tatjana2011

Omics approaches for subcellular translation studiesKoppel, Indrek; Fainzilber, MikeMolecular omics2018 / p. 380–388 : ill http://dx.doi.org/10.1039/c8mo00172c

Quantitative proteomics of Escherichia coli : from relative to absolute scale = Kvantitatiivne Escherichia coli proteoomika : relatiivsetest numbritest absoluutsete kogusteniArike, Liisa2012 http://www.ester.ee/record=b2931221*est

Rakulise vase proteoomi süsteemibioloogiaPalumaa, Peep; Zovo, KairitXXXII Eesti Keemiapäevad : teaduskonverentsi teesid2011 / lk. 73 : ill