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Dynamic single fermenter model for study of survival and growth of probiotics in human upper gastrointestinal tractSumeri, Ingrid; Arike, Liisa; Adamberg, Signe; Adamberg, Kaarel; Liidemann, G.; Stekolštšikova, Jelena; Laht, Tiiu-Maie; Paalme, ToomasBook of abstracts : Gut Microbiology : Research to Improve Health, Immune Response and Nutrition : Aberdeen, Scotland, 21-23 June 20062006 / ? p

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Effect of stress pretreatment on survival of probiotic bacteria in gastrointestinal tract simulatorSumeri, Ingrid; Arike, Liisa; Stekolštšikova, Jelena; Uusna, Riin; Adamberg, Signe; Adamberg, Kaarel; Paalme, ToomasApplied microbiology and biotechnology2010 / 6, p. 1925-1931 : ill https://pubmed.ncbi.nlm.nih.gov/20107984/

Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth ratesEsquerré, Thomas; Moisan, Annick; Chiapello, Hélène; Arike, Liisa; Vilu, Raivo; Gaspin, Christine; Cocaign-Bousquet, Muriel; Girbal, LaurenceBMC Genomics2015 / art. 275 https://doi.org/10.1186/s12864-015-1482-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Identification and relative quantification of proteins in Escherichia coli proteome by “up-front” collision-induced dissociationArike, Liisa; Nahku, Ranno; Borissova, Maria; Adamberg, Kaarel; Vilu, RaivoEuropean journal of mass spectrometry2010 / 2, p. 227-235 https://pubmed.ncbi.nlm.nih.gov/20212332/

Identification and relative quantification of proteins in Esheria coli proteome using up-front CIDArike, LiisaNoSSS2009 : 5th Conference on Separation and Related Techniques by Nordic Separation Science Society : 26-29 August, 2009, Tallinn University of Technology, Estonia : abstract book and program2009 / p. 75

Metabolic changes underlying the higher accumulation of glutathione in saccharomyces cerevisiae mutantsOrumets, Kerti; Nisamedtinov, Ildar; Kevvai, Kaspar; Arike, Liisa; Sarand, Inga; Korhola, Matti; Paalme, ToomasFood and nutrition = Toit ja toitumine. XVII : book of abstracts : the 5th Baltic Conference on Food Science and Technology : Foodbalt-20102010 / p. 112 https://pubmed.ncbi.nlm.nih.gov/21052993/

Metabolic changes underlying the higher accumulation of glutathione in Saccharomyces cerevisiae mutantsNisamedtinov, Ildar; Kevvai, Kaspar; Orumets, Kerti; Arike, Liisa; Sarand, Inga; Korhola, Matti; Paalme, ToomasApplied microbiology and biotechnology2011 / 4, p. 1029-1037 : ill https://pubmed.ncbi.nlm.nih.gov/21052993/

Metabolic pathways of human microbiota co-utilization of fibres and colonic mucins : [manuscript]Raba, Grete; Luis, Ana S.; Schneider, Hannah; Morell, Indrek; Jin, Cunsheng; Adamberg, Signe; Hansson, Gunnar C.; Adamberg, Kaarel; Arike, Liisa2023

Metaproteomics reveals parallel utilization of colonic mucin glycans and dietary fibers by the human gut microbiotaRaba, Grete; Luis, Ana S.; Schneider, Hannah; Morell, Indrek; Jin, Chunsheng; Adamberg, Signe; Hansson, Gunnar C.; Adamberg, Kaarel; Arike, LiisaIscience2024 / art. 110093

Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth ratesLahtvee, Petri-Jaan; Adamberg, Kaarel; Arike, Liisa; Nahku, Ranno; Aller, Kadri; Vilu, RaivoMicrobial cell factories2011 / Article no. 12 https://microbialcellfactories.biomedcentral.com/articles/10.1186/1475-2859-10-12

Protein turnover forms one of the highest maintenance costs in Lactococcus lactisLahtvee, Petri-Jaan; Seiman, Andrus; Arike, Liisa; Adamberg, Kaarel; Vilu, RaivoMicrobiology2014 / p.1501-1512 : ill https://doi.org/10.1099/mic.0.078089-0 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Quantitative proteomics of Escherichia coli : from relative to absolute scale = Kvantitatiivne Escherichia coli proteoomika : relatiivsetest numbritest absoluutsete kogusteniArike, Liisa2012 http://www.ester.ee/record=b2931221*est

Single bioreactor gastrointestinal tract simulator for study of survival of probiotic bacteriaSumeri, Ingrid; Arike, Liisa; Adamberg, Kaarel; Paalme, ToomasApplied microbiology and biotechnology2008 / 2, p. 317-324 https://pubmed.ncbi.nlm.nih.gov/18581109/

Sobemovirus RNA linked to VPg over a threonine residueOlspert, Allan; Arike, Liisa; Peil, Lauri; Truve, ErkkiFEBS letters2011 / p. 2979-2985 : ill https://pubmed.ncbi.nlm.nih.gov/21855544/

Systems biology approach reveals that overflow metabolism of acetate in Escheria coli is triggered by carbon catabolite repression of acetyl-CoA synthetaseValgepea, Kaspar; Adamberg, Kaarel; Nahku, Ranno; Lahtvee, Petri-Jaan; Arike, Liisa; Vilu, RaivoBMC systems biology2010 / p. 166 https://pubmed.ncbi.nlm.nih.gov/21122111/