• Absolute quantitative multi-omics characterization of specific growth rate-dependent metabolism of Escherichia coli = Absoluutselt kvantitatiivsetel oomikameetoditel põhinev kasvuerikiirusest sõltuva Escherichia coli metabolismi kirjeldamineValgepea, Kaspar2014 https://digi.lib.ttu.ee/i/?1089
• Advanced continuous cultivation methods for systems microbiologyAdamberg, Kaarel; Valgepea, Kaspar; Vilu, RaivoMicrobiology2015 / p. 1707-1719 : ill http://dx.doi.org/10.1099/mic.0.000146
• Comparison and applications of label-free absolute proteome quantification methods on Escherichia coliArike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of proteomics2012 / p. 5437-5448 : ill https://pubmed.ncbi.nlm.nih.gov/22771841/
• Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coliPeebo, Karl; Valgepea, Kaspar; Nahku, Ranno; Riis, Gethe; Õun, Mikk; Adamberg, Kaarel; Vilu, RaivoApplied microbiology and biotechnology2014 / p. 5131-5143 : ill https://doi.org/10.1007/s00253-014-5613-y https://www.scopus.com/sourceid/14957 https://www.scopus.com/record/display.uri?eid=2-s2.0-84901685293&origin=inward&txGid=d79d12b3679b0b8b7f83c15c2f0f55ab https://jcr.clarivate.com/jcr-jp/journal-profile?journal=APPL%20MICROBIOL%20BIOT&year=2014 https://www.webofscience.com/wos/woscc/full-record/WOS:000336268900031
• Corrigendum to: "Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli" [J Proteomics 75 (17) (2012) 5437-5448]Arike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of Proteomics2013 / p. 619 https://doi.org/10.1016/j.jprot.2013.07.012 https://www.scopus.com/sourceid/11700154304 https://www.scopus.com/record/display.uri?eid=2-s2.0-84890607302&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1016%2Fj.jprot.2013.07.012%29&sessionSearchId=08e7c58f88aea92900d731f06ee215ed https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20PROTEOMICS&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000327906000049
• Decrease of energy spilling in Escherichia coli continuous cultures with rising specific growth rate and carbon wastingValgepea, Kaspar; Adamberg, Kaarel; Vilu, RaivoBMC systems biology2011 / p. 106 https://pubmed.ncbi.nlm.nih.gov/21726468/
• Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteinsValgepea, Kaspar; Adamberg, Kaarel; Seiman, Andrus; Vilu, RaivoMolecular biosystems2013 / p. 2344-2358 : ill https://doi.org/10.1039/c3mb70119k https://www.scopus.com/sourceid/145703 https://www.scopus.com/record/display.uri?eid=2-s2.0-84881087942&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1039%2Fc3mb70119k%29&sessionSearchId=a8bfbd7082bd7a0293722547f74d2a8f https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MOL%20BIOSYST&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000322447600015
• Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteinsValgepea, Kaspar; Adamberg, Kaarel; Seiman, Andrus; Vilu, RaivoTÜ ja TTÜ doktorikool "Funktsionaalsed materjalid ja tehnoloogiad" : 04.-05. märts 2014, Tartu2014 / [1] p
• Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathwaysPey, Jon; Valgepea, Kaspar; Rubio, Angel; Beasley, John E; Planes, Francisco JavierBMC Systems Biology2013 / art. 134 https://doi.org/10.1186/1752-0509-7-134 https://www.scopus.com/sourceid/6700153291 https://www.scopus.com/record/display.uri?eid=2-s2.0-84889040435&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1186%2F1752-0509-7-134%29&sessionSearchId=09c53dd41ef9fa4501d393829f4e1654 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=BMC%20SYST%20BIOL&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000329782000001
• Lean-proteome strains - next step in metabolic engineeringValgepea, Kaspar; Peebo, Karl; Adamberg, Kaarel; Vilu, RaivoFrontiers in bioengineering and biotechnology2015 / p. 1-4 http://dx.doi.org/10.3389/fbioe.2015.00011
• Proteome reallocation in Escherichia coli with increasing specific growth ratePeebo, Karl; Valgepea, Kaspar; Maser, Andres; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoMolecular biosystems2015 / p. 1184-1193 : ill http://dx.doi.org/10.1039/c4mb00721b
• Quasi steady state growth of Lactococcus lactis in glucose-limited acceleration stat (A-stat) culturesAdamberg, Kaarel; Lahtvee, Petri-Jaan; Valgepea, Kaspar; Abner, Kristo; Vilu, RaivoAntonie van Leeuwenhoek2009 / 3, p. 219-226 https://pubmed.ncbi.nlm.nih.gov/19184516/
• Specific growth rate dependent transcriptiome profiling of Escherichia coli K12 MG1655 in accelerostat culturesNahku, Ranno; Valgepea, Kaspar; Lahtvee, Petri-Jaan; Erm, Sten; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoJournal of biotechnology2010 / 1, p. 60-65 https://www.sciencedirect.com/science/article/pii/S0168165609004726
• Steady state growth space study of Lactococcus lactis in D-stat culturesLahtvee, Petri-Jaan; Valgepea, Kaspar; Nahku, Ranno; Abner, Kristo; Adamberg, Kaarel; Vilu, RaivoAntonie van Leeuwenhoek2009 / 4, p. 487-496 https://pubmed.ncbi.nlm.nih.gov/19603284/
• Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous cultureNahku, Ranno; Peebo, Karl; Valgepea, Kaspar; Barrick, Jeffrey E.; Adamberg, Kaarel; Vilu, RaivoMicrobiology2011 / p. 2604-2610 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352173/
• Systems biology approach reveals that overflow metabolism of acetate in Escheria coli is triggered by carbon catabolite repression of acetyl-CoA synthetaseValgepea, Kaspar; Adamberg, Kaarel; Nahku, Ranno; Lahtvee, Petri-Jaan; Arike, Liisa; Vilu, RaivoBMC systems biology2010 / p. 166 https://pubmed.ncbi.nlm.nih.gov/21122111/