• Biological effect indicators : influence of environmental parameters and contaminants on Amphipods = Bioloogilise mõju indikaatorid : keskkonnaparameetrite ja ohtlike ainete mõju kirpvähilisteleKolesova, Natalja2024 https://doi.org/10.23658/taltech.40/2024 https://www.ester.ee/record=b5694394*est https://digikogu.taltech.ee/et/Item/961ea92d-ef14-429c-8e99-e56d652b4a44
• Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcodingNagai, Satoshi; Sildever, Sirje; Nishi, NorikoMetabarcoding and metagenomics2022 / art. e77704 https://doi.org/10.3897/mbmg.6.77704 https://www.scopus.com/sourceid/21101022488 https://www.scopus.com/record/display.uri?eid=2-s2.0-85126627168&origin=inward&txGid=978fb98277639e69349cb63b698c636d
• Competitive advantage and higher fitness in native populations of genetically structured planktonic diatomsSildever, Sirje; Sefbom, Josefin; Lips, Inga; Godhe, AnnaEnvironmental microbiology2016 / p. 4403-4411 : ill https://doi.org/10.1111/1462-2920.13372 https://www.scopus.com/sourceid/19683 https://www.scopus.com/record/display.uri?eid=2-s2.0-84994225727&origin=inward&txGid=1a9b93fe969294fdc853666cf481f625 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=ENVIRON%20MICROBIOL&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000392946900009
• Development of an absolute quantification method for ribosomal RNA gene copy numbers per eukaryotic single cell by digital PCRYarimizu, Kyoko; Sildever, Sirje; Hamamoto, Yoko; Tazawa, Satoshi; Oikawa, Hiroshi; Yamaguchi, Haruo; Basti, Leila; Mardones, Jorge I.; Paredes-Mella, Javier; Nagai, SatoshiHarmful Algae2021 / art. 102008, 13 p. : ill https://doi.org/10.1016/j.hal.2021.102008 https://www.scopus.com/sourceid/19723 https://www.scopus.com/record/display.uri?eid=2-s2.0-85102472089&origin=inward&txGid=d41959b375b031f75d1bc7f331cb7bdc https://jcr.clarivate.com/jcr-jp/journal-profile?journal=HARMFUL%20ALGAE&year=2021 https://www.webofscience.com/wos/woscc/full-record/WOS:000651294000006
• DNA metabarcoding: Guidelines to monitor phytoplankton diversity and distribution in marine and brackish watersJerney, Jacqueline; Hällfors, Heidi; Jakobsen, Hans; Jurgensone, Iveta; Karlson, Bengt; Kremp, Anke; Lehtinen, Sirpa; Majaneva, Markus; Meissner, Kristian; Norros, Veera; Sildever, Sirje; Suikkanen, Sanna; Teeveer, Karolin2023 http://https://www.norden.org/en/publication/dna-metabarcoding
• DNA tõi Soome lahest päevavalgele ligi 20 uut planktoniliiki [Võrguväljaanne]Sildever, Sirjenovaator.err.ee2021 https://novaator.err.ee/1608396092/dna-toi-soome-lahest-paevavalgele-ligi-20-uut-planktoniliiki
• Eesti teadlane aitas tuvastada merest enneolematu hulga mikroorganismeSildever, Sirjenovaator.err.ee2023 https://novaator.err.ee/1609137761/eesti-teadlane-aitas-tuvastada-merest-enneolematu-hulga-mikroorganisme
• Eight years of weekly eDNA monitoring in the North-Western PacificSildever, Sirje; Nishi, Noriko; Tazawa, Satoshi; Kasai, Hiromi; Hirai, Junya; Shiomoto, Akihiro; Kikuchi, Tasei; Katakura, Seiji; Nagai, SatoshiEnvironmental DNA2023 / p. 1202 - 1215 https://doi.org/10.1002/edn3.452 https://www.scopus.com/sourceid/21101043805 https://www.scopus.com/record/display.uri?eid=2-s2.0-85166416973&origin=inward&txGid=d5319fd5b0177d986705cfe704030e69
• Factors contributing to the potential expansion of Limnomonas gaiensis (Chlamydomonadales, Chlorophyta) in freshwater lakes in Northern EuropeSildever, Sirje; Stewart, Rebecca I. A.; Tesson, Sylvie V. M.European journal of phycology2023 https://doi.org/10.1080/09670262.2023.2274080
• Genetic relatedness of a new Japanese isolates of Alexandrium ostenfeldii bloom population with global isolatesSildever, Sirje; Jerney, Jacqueline; Kremp, Anke; Oikawa, Hiroshi; Sakamoto, SetsukoHarmful Algae2019 / p. 64-74 : ill https://doi.org/10.1016/j.hal.2019.02.005
• Growth and feeding behaviour of Mixotrophic Dinophysis species in laboratory culturesNagai, Satoshi; Sildever, Sirje; Suzuki, Toshiyki; Nishitani, Goh; Basti, Leila; Kamiyama, TakashiDinoflagellates: classification, evolution, physiology and ecological significance2020 / p. 129-168 https://novapublishers.com/shop/dinoflagellates-classification-evolution-physiology-and-ecological-significance/
• Growth, toxin content and production of Dinophysis norvegica in cultured strains isolated from Funka Bay (Japan)Nagai, Satoshi; Basti, Leila; Uchida, Hajime; Kuribayashi, Takanori; Natsuike, Masafumi; Sildever, Sirje; Nakayama, Natsuko; Lum, Wai Mun; Matsushima, RyujiToxins2023 / art. 318 https://doi.org/10.3390/toxins15050318 https://www.scopus.com/sourceid/19700188352 https://www.scopus.com/record/display.uri?eid=2-s2.0-85160331708&origin=inward&txGid=6746e2a580177fa53e01f71b8dc5c452 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=TOXINS&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000998025900001
• Improving taxonomic classification of marine zooplankton by molecular approach: registration of taxonomically verified 18S and 28S rRNA gene sequencesWatanabe, Tsuyoshi; Hirai, Junya; Sildever, Sirje; Tadokoro, Kazuaki; Hidaka, Kiyotaka; Tanita, Iwao; Nishiuchi, Koh; Iguchi, Naoki; Kasai, Hiromi; Nishi, Noriko; Katakura, Seiji; Taniuchi, Yukiko; Kodama, Taketoshi; Tashiro, Satokuni; Nakae, Misato; Okazaki, Yuji; Kitajima, Satoshi; Sogawa, Sayak; Hasegawa, Toru; Azumaya, Tomonori; Hiroe, Yutaka; Ambe, Daisuke; Setou, Takashi; Ito, Daiki; Kusaka, Akira; Okunishi, Takeshi; Tanaka, Takahiro; Kuwata, Akira; Hasegawa, Daisuke; Kakehi, Shigeho; Shimizu, Yugo; Nagai, SatoshPeerJ2023 / art. e15427 https://doi.org/10.7717/peerj.15427 https://www.scopus.com/sourceid/21100239256 https://www.scopus.com/record/display.uri?eid=2-s2.0-85166224061&origin=inward&txGid=640394b65aef385ae7967d65df79ece5 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=PEERJ&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001024034800003
• Influence of physical-chemical factors on community and populations of the Baltic Sea spring bloom microalgae = Füüsikalis-keemiliste tegurite mõju kevadõitsengu mikrovetikate kooslustele ja populatsioonidele LäänemeresSildever, Sirje2017 https://digi.lib.ttu.ee/i/?7192 https://www.ester.ee/record=b4649787*est
• Influence of surface salinity gradient on dinoflagellate cyst community structure, abundance and morphology in the Baltic Sea, Kattegat and SkagerrakSildever, Sirje; Andersen, Thorbjørn Joest; Ribeiro, Sofia; Ellegaard, MarianneEstuarine, Coastal and Shelf Science2015 / p. 1-7 https://doi.org/10.1016/j.ecss.2015.01.003
• Linking contaminant exposure to embryo aberrations in sediment-dwelling amphipods : a multi-basin field study in the Baltic SeaKolesova, Natalja; Sildever, Sirje; Strode, Evita; Berezina, Nadezhda; Sundelin, B.; Lips, Inga; Kuprijanov, Ivan; Buschmann, Fred; Gorokhova, ElenaEcological indicators2024 / art. 111837 https://doi.org/10.1016/j.ecolind.2024.111837
• Mere hoidjad: Kui igaüks võtaks rannast lahkudes lisaks enda prahile kaasa osa võõrast, saaks meri puhtamaksLepassalu, VirkkoPealinn2023 / Lk. 6-7
• Monitoring harmful microalgal species and their appearance in Tokyo Bay, Japan, using metabarcodingSildever, Sirje; Nishi, Noriko; Inaba, Nobuharu; Asakura, Taiga; Kikuchi, Jun; Asano, Yasuhito; Kobayashi, Takanori; Gojobori, Takashi; Nagai, SatoshiMetabarcoding and metagenomics2022 / art. e79471 https://doi.org/10.3897/mbmg.6.79471 https://www.scopus.com/sourceid/21101022488 https://www.scopus.com/record/display.uri?eid=2-s2.0-85149587942&origin=inward&txGid=37dbfa10dedc874464e18f76d77715d0
• Monitoring of the toxic dinoflagellate Alexandrium catenella in Osaka Bay, Japan using a massively parallel sequencing (MPS)-based techniqueNagai, Satoshi; Chen, Hungyen; Kawakami, Yoko; Yamamoto, Keigo; Sildever, SirjeHarmful Algae2019 / art. 101660, 13 p. : ill https://doi.org/10.1016/j.hal.2019.101660
• The pH tolerance range of the airborne species Tetracystis vinatzeri (Chlorophyceae, Chlamydomonadales)Tesson, Sylvie V. M.; Sildever, SirjeEuropean journal of phycology2023 / 11 p https://doi.org/10.1080/09670262.2023.2260444 https://www.scopus.com/sourceid/18021 https://www.scopus.com/record/display.uri?eid=2-s2.0-85174388127&origin=inward&txGid=37bdf15098aadba7d6ffe26baf25fc9d https://jcr.clarivate.com/jcr-jp/journal-profile?journal=EUR%20J%20PHYCOL&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:001089695100001
• Physical barriers and environmental gradients cause spatial and temporal genetic differentiation of an extensive algal bloomGodhe, Anna; Sjöqvist, Conny; Sildever, Sirje; Lips, IngaJournal of biogeography2016 / p. 1130-1142 : ill https://doi.org/10.1111/jbi.12722 https://www.scopus.com/sourceid/29269 https://www.scopus.com/record/display.uri?eid=2-s2.0-84957818454&origin=inward&txGid=b91d8c21cc6e8102656766970f810125 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20BIOGEOGR&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000378711000006
• Pinnakihi soolsuse gradiendi mõju bioloogiliste koosluste struktuurile LäänemeresSildever, SirjeTalveAkadeemia 2013 : [teaduslikud lühiartiklid]. Kogumik 11/20132013 / lk. 101-110 : ill
• Plankton biodiversity and species co-occurrence based on environmental DNA - a multiple marker studySildever, Sirje; Laas, Peeter; Kolesova, Natalja; Lips, Inga; Lips, Urmas; Nagai, SatoshiMetabarcoding and metagenomics2021 / p. 175-197 : ill https://doi.org/10.3897/mbmg.5.72371 https://www.scopus.com/sourceid/21101022488 https://www.scopus.com/record/display.uri?eid=2-s2.0-85119582023&origin=inward&txGid=755fd96e1f125416c5aaefb169c9f823
• Reconstructing salinity changes and environmental influence on dinoflagellate cysts in the central Baltic Sea since the late 19th centurySildever, SirjeEstuarine, coastal and shelf science2019 / p. 384-394 https://doi.org/10.1016/j.ecss.2019.02.034 https://www.scopus.com/sourceid/26844 https://www.scopus.com/record/display.uri?eid=2-s2.0-85062238658&origin=inward&txGid=a83ba32453282d702490756ffa76aed8 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=ESTUAR%20COAST%20SHELF%20S&year=2021 https://www.webofscience.com/wos/woscc/full-record/WOS:000462100000037
• Reliable environmental DNA detection of planktonic biodiversity : minimum sample volume for DNA metabarcodingSildever, Sirje; Edvardsen, Bente; Egge, Elianne; Engesmo, Anette; Harðardóttir, Sara; Jacobsen, Asa; Jacobsen, Hans; Jurgensone, Iveta; Pärt, Kristian; Rünk, Nelli2025 https://doi.org/10.6027/temanord2025-509 https://pub.norden.org/temanord2025-509/temanord2025-509.pdf
• Spatio-temporal interdependence of bacteria and phytoplankton during a Baltic Sea spring bloomBunse, Carina; Bertos-Fortis, Mireia; Sassenhagen, Ingrid; Sildever, Sirje; Lips, IngaFrontiers in microbiology2016 / p. 1-10 : ill https://doi.org/10.3389/fmicb.2016.00517 https://www.scopus.com/sourceid/21100226442 https://www.scopus.com/record/display.uri?eid=2-s2.0-84966263551&origin=inward&txGid=ef9395bf2131a7debc6601c26fcbd147 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=FRONT%20MICROBIOL&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000374468900001
• Spring bloom dinoflagellate cyst dynamics in three eastern sub-basins of the Baltic SeaSildever, Sirje; Kremp, Anke; Enke, Annely; Buschmann, Fred; Maljutenko, Ilja; Lips, IngaContinental shelf research2017 / p. 46-55 : ill https://doi.org/10.1016/j.csr.2016.11.012 https://www.scopus.com/sourceid/26817 https://www.scopus.com/record/display.uri?eid=2-s2.0-85013218431&origin=inward&txGid=bcbafee49a7b1c6cf9d82269323f0853 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=CONT%20SHELF%20RES&year=2023 https://www.webofscience.com/wos/woscc/full-record/WOS:000399268600005
• Spring bloom in the Gulf of Finland - interannual variability caused by meterorological and hydrological conditionsLips, Inga; Sildever, Sirje; Lips, Urmas; Rünk, Nelli; Kikas, Villu10th Baltic Sea Science Congress : Science and innovation for future of the Baltic and the European regional seas : 15-19 June, 2015, Riga, Latvia : abstract book2015 / p. 106 http://www.bssc2015.lv/wp-content/uploads/2015/07/10th_BSSC_AbstractBook_final.pdf
• Strain variability in toxin profiles and toxic potential of Dinophysis fortii populations from Southwestern and Northern Japanese coastal watersSildever, Sirje; Uchida, Hajime; Kuribayashi, Takanori; Natsuike, Masafumi; Hada, Yasufumi; Miyazono, Akira; Kosaka, Yuki; Nakayama, Natsuko; Lum, Wai Mun; Miyahara, Kazutaka; Yamamoto, Kana; Matsushima, Ryoji; Suzuki, Toshiyuki; Nagai, SatoshiHarmful Algae2025 / art. 102803 https://doi.org/10.1016/j.hal.2025.102803
• Teaduspurjekas tuleb Suvel EestisseSildever, SirjeHorisont2023 / lk. 4 : fot https://www.ester.ee/record=b1072243*est
• Temperature optima of a natural diatom population increases as global warming proceedsHattich, G. S. I.; Jokinen, S.; Sildever, Sirje; Gareis, M.; Heikkinen, J.; Junghardt, N.; Segovia, M.; Machado, M.; Sjöqvist, C.Nature climate change2024 https://doi.org/10.1038/s41558-024-01981-9
• Toxic HAB species from the Sea of Okhotsk detected by a metagenetic approach, seasonality and environmental driversSildever, Sirje; Kawakami, Yoko; Kanno, NanakoHarmful Algae2019 / art. 101631, 12 p. : ill https://doi.org/10.1016/j.hal.2019.101631
• Transpordi ja keskkonnatingimuste mõju Läänemere mikrovetikateleSildever, SirjePaat & Meremees2016 / lk. 94-96 : ill https://artiklid.elnet.ee/record=b2809625*est
• Uued inimesed ja positsioonidKõrbe Kaare, Kati; Veltri, Niccolo; Grossberg-Kuusk, Maarja; Kauk-Kuusik, Marit; Konist, Alar; Sildever, Sirje; Avarmaa, MariMente et Manu2023 / lk. 49-53 : fot https://www.ester.ee/record=b1242496*est
• Микромусор в море: убрать невозможно, пресечь приток — реальноLepassalu, VirkkoStolitsa.ee2023 https://stolitsa.ee/estoniya/mikromusor-v-more-ubrat-nevozmozhno-presech-pritok-realno