The absence of active creatine kinase system influences cardiac calcium handlingLaasmaa, Martin; Branovets, Jelena; Karro, Niina; Birkedal Nielsen, Rikke; Vendelin, MarkoBiophysical journal2019 / Poster 484 ; p. 96a https://doi.org/10.1016/j.bpj.2018.11.558

Albumin affects the stability, oligomerization and ligand interactions of lipoprotein lipaseRisti, Robert; Gunn, Kathryn H.; Hiis-Hommuk, Kristofer; Seeba, Natjan-Naatan; Villo, Ly; Vendelin, Marko; Neher, Saskia B.; Lõokene, AivarAtherosclerosis2022 / p. 68 https://doi.org/10.1016/j.atherosclerosis.2022.06.428

Albumin and heparin together or separately — different outcome on lipoprotein lipaseoligomerization and stabilityRisti, Robert; Gunn, K.; Villo, Ly; Hiis-Hommuk, Kristofer; Seeba, Natjan-Naatan; Karimi, Hamed; Vendelin, Marko; Neher, Saskia B.; Lõokene, AivarFEBS Open Bio2023 / p. 223 https://doi.org/10.1002/2211-5463.13646

Altered calcium handling in cardiomyocytes from arginine-glycine amidinotransferase-knockout mice is rescued by creatineLaasmaa, Martin; Branovets, Jelena; Barsunova, Karina; Karro, Niina; Lygate, Craig A.; Birkedal Nielsen, Rikke; Vendelin, MarkoAmerican journal of physiology-heart and circulatory physiology2020 / p. H805-H825 https://doi.org/10.1152/ajpheart.00300.2020 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Analysis of molecular movement reveals latticelike obstructions to diffusion in heart muscle cellsIllaste, Ardo; Laasmaa, Martin; Peterson, Pearu; Vendelin, MarkoBiophysical journal2012 / p. 739-748 : ill https://www.sciencedirect.com/science/article/pii/S0006349512000859

Bidirectionality and compartmentation of metabolic fluxes are revealed in the dynamics of isotopomer networksSchryer, David; Peterson, Pearu; Paalme, Toomas; Vendelin, MarkoInternational journal of molecular sciences2009 / 4, p. 1697-1718 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680642/

Cardiac dynamics involving arrhythmias and continuum mechanicsEngelbrecht, Jüri; Vendelin, Marko; Kongas, Olav; Hertzen, R. vonTrends in continuum physics TRECOP 981999 / p. 113-118

Cardiac expression and location of hexokinase changes in a mouse model of pure creatine deficiencyBranovets, Jelena; Karro, Niina; Barsunova, Karina; Laasmaa, Martin; Lygate, Craig A.; Vendelin, Marko; Birkedal Nielsen, RikkeAmerican journal of physiology-heart and circulatory physiology2021 / p. H613−H629 https://doi.org/10.1152/ajpheart.00188.2020 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Cardiac mechanoenergetics in silicoVendelin, Marko2001 http://www.ester.ee/record=b1556271*est

Cardiac muscle regulatory units are predicted to interact stronger than neighboring cross-bridgesKalda, Mari; Vendelin, MarkoBiophysical journal2018 / p. 549a https://doi.org/10.1016/j.bpj.2017.11.2998

Cardiac muscle regulatory units are predicted to interact stronger than neighboring cross-bridgesKalda, Mari; Vendelin, MarkoScientific reports2020 / art. 5530, 13 p. : ill https://doi.org/10.1038/s41598-020-62452-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Cardiomyocytes from female compared to male mice have larger ryanodine receptor clusters and higher calcium spark frequencyLaasmaa, Martin; Branovets, Jelena; Stolova, Jekaterina; Shen, Xin; Rätsepso, Triinu; Balodis, Mihkel Jaan; Grahv, Cärolin; Hendrikson, Eliise; Louch, William Edward; Birkedal Nielsen, Rikke; Vendelin, MarkoThe journal of physiology2023 / p. 4033-4052 : ill https://doi.org/10.1113/JP284515

Cellprofiler is a fit tool for droplet digital image analysisBartkova, Simona; Vendelin, Marko; Pata, Pille; Scheler, Ott23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2019) Basel, Switzerland, 27 – 31 October 20192020 / art. 163704, p. 1644-1645 https://doi.org/10.1101/811869

Combined action of albumin and heparin regulates lipoprotein lipase oligomerization, stability, and ligand interactionsRisti, Robert; Gunn, Kathryn H.; Hiis-Hommuk, Kristofer; Seeba, Natjan-Naatan; Karimi, Hamed; Villo, Ly; Vendelin, Marko; Neher, Saskia B.; Lõokene, AivarPLoS ONE2023 / art. e0283358, 24 p. : ill https://doi.org/10.1371/journal.pone.0283358

Compromised creatine kinase energy transfer leads to adaptations in cardiacexcitation-contraction coupling that are distinct from changes associated with heart failure : [manuscript]Branovets, Jelena; Kalda, Mari; Laasmaa, Martin; Stolova, Jekaterina; Shen, Xin; Balodis, Mihkel Jaan; Grahv, Cärolin; Hendrikson, Eliise; Louch, William Edward; Birkedal Nielsen, Rikke; Vendelin, Marko2022

Cross-bridge group ensembles describing cooperativity in thermodynamically consistent wayKalda, Mari; Peterson, Pearu; Vendelin, MarkoBiophysical journal2016 / p. 463a https://doi.org/10.1016/j.bpj.2015.11.2481

Cross-bridge group ensembles describing cooperativity in thermodynamically consistent wayKalda, Mari; Peterson, Pearu; Vendelin, MarkoPLoS ONE2015 / p. 1-26 : ill https://doi.org/10.1371/journal.pone.0137438

Droplet image analysis with user-friendly freeware CellProfilerBartkova, Simona; Vendelin, Marko; Sanka, Immanuel; Pata, Pille; Scheler, OttAnalytical methods2020 / p. 2287-2294 : ill https://doi.org/10.1039/D0AY00031K Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Energy-efficiency of cardiomyocyte stimulation with rectangular pulsesLaasmaa, Martin; Lu, Pengfei; Veletic, Mladen; Louch, William Edward; Bergsland, Jacob; Balasingham, Ilangko; Vendelin, MarkoScientific reports2019 / art. 13307, p. 1−9 https://doi.org/10.1038/s41598-019-49791-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

The influence of alternative energy transfer systems on respiration in creatine-deficient mouse cardiomyocytesBranovets, Jelena; Jugai, Svetlana; Vendelin, Marko; Birkedal Nielsen, RikkeBiophysical journal2016 / p. 474a-475a https://doi.org/10.1016/j.bpj.2015.11.2538

Intracellular compartmentalization shapes energy transfer – differences betweenadenylate kinase activities in homogenate and permeabilized cardiomyocytes : [manuscript]Branovets, Jelena; Vendelin, Marko; Birkedal Nielsen, Rikke2022

Intracellular diffusion of adenosine phosphates is locally restricted in cardiac muscleVendelin, Marko; Eimre, Margus; Seppet, Evelin; Peet, Nadežda; Andrienko, Tatiana; Lemba, Maris; Engelbrecht, Jüri; Seppet, Enn; Saks, ValdurMolecular and cellular biochemistry2004 / p. 229-241 : ill

IOCBIO Kinetics : an open-source software solution for analysis of data tracesVendelin, Marko; Laasmaa, Martin; Kalda, Mari; Branovets, Jelena; Karro, Niina; Barsunova, Karina; Birkedal Nielsen, RikkePLoS computational biology2020 / art. e1008475 https://doi.org/10.1371/journal.pcbi.1008475 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

IOCBIO Sparks detection and analysis softwareLaasmaa, Martin; Karro, Niina; Birkedal Nielsen, Rikke; Vendelin, MarkoBiophysical journal2019 / art. 1900-Pos ; p. 384a https://doi.org/10.1016/j.bpj.2018.11.2080

IOCBIO Sparks detection and analysis softwareLaasmaa, Martin; Karro, Niina; Birkedal Nielsen, Rikke; Vendelin, MarkoPeerJ2019 / art. e6652, 28 p. : ill https://doi.org/10.7717/peerj.6652 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Isotopomeric 13C labeling of amino acids reveal compartmentation in Saccharomyces uvarumSchryer, David; Peterson, Pearu; Paalme, Toomas; Vendelin, MarkoBiophysical journal2009 / 3, Supplement 1, p. 308a

Kahe tuhande kaheksanda aasta teaduspreemia geo- ja bioteaduste alal tööde tsükli "Molekulaarne süsteemne bioenergeetika" eest : [Valdur Saks (kollektiivi juht), Jüri Engelbrecht, Enn Seppet, Marko Vendelin]Saks, Valdur; Engelbrecht, Jüri; Seppet, Enn; Vendelin, MarkoTeadusmõte Küberneetika Instituudis2010 / lk. 120-130 : ill

Linear dependence of myocardium oxygen consumption on stress-strain area predicted by cross-bridge modelVendelin, Marko; Bovendeerd, Peter; Arts, Theo; Engelbrecht, Jüri; Campen, Dick H. vanMedical & biological engineering & computing1999 / Suppl. 1, Proceedings of the 11th Nordic-Baltic Conference on Biomedical Engineering, June 6-10, 1999, Tallinn, Estonia, p. 63-66: ill

Marker enzyme activities in hindleg from creatine-deficient AGAT and GAMT KO mice - differences between models, muscles, and sexesBarsunova, Karina; Vendelin, Marko; Birkedal Nielsen, RikkeScientific reports2020 / Art. 7956, 9 p https://doi.org/10.1038/s41598-020-64740-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Metabolic compartmentation in rainbow trout cardiomyocytes : coupling of hexokinase but not creatine kinase to mitochondrial respirationKarro, Niina; Sepp, Mervi; Jugai, Svetlana; Laasmaa, Martin; Vendelin, Marko; Birkedal Nielsen, RikkeJournal of comparative physiology B2017 / p. 103-116 : ill https://doi.org/10.1007/s00360-016-1025-x

Microstructure described by hierarchical internal variablesEngelbrecht, Jüri; Vendelin, MarkoRendiconti del Seminario Matematico (Università e Politecnico di Torino)2000 / 83-91

Modeling of the coupled enzyme systems : model of mitochondrial creatine kinase (miCK) and adenine nucleotide translocase (ANT) couplingVendelin, Marko; Anmann, Tiia; Käämbre, Tuuli; Sikk, Peeter; Saks, ValdurBiophysical Society meeting abstracts : Biophysical journal supplement2007 / p. 660A

Molecular dynamics simulations of creatine kinase and adenine nucleotide translocase in mitochondrial membrane patchKaro, Jaanus; Peterson, Pearu; Vendelin, MarkoThe journal of biological chemistry2012 / p. 7467-7476 : ill https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3293576/

Molekulaarne süsteemne bioenergeetika : kommentaar Eesti Vabariigi teaduse aastapreemia pälvinud tööde tsüklileSaks, Valdur; Engelbrecht, Jüri; Seppet, Enn; Vendelin, MarkoTallinna Tehnikaülikooli aastaraamat 20082009 / lk. 291-298 : ill

Multi-nodal nano-actuator pacemaker for energy-efficient stimulation of cardiomyocytesLu, Pengfei; Veletic, Mladen; Laasmaa, Martin; Vendelin, MarkoNano Communication Networks2019 / art. 100270, 11 p. : ill https://doi.org/10.1016/j.nancom.2019.100270 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Number of open mitochondrial voltage-dependent anion channels and intracellular diffusion coefficient in heart muscleSimson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Branovets, Jelena; Peterson, Pearu; Birkedal Nielsen, Rikke; Vendelin, MarkoBiophysical journal2016 / p. 475a https://doi.org/10.1016/j.bpj.2015.11.2540

On the complexity of signal propagation in nerve fibresEngelbrecht, Jüri; Peets, Tanel; Tamm, Kert; Laasmaa, Martin; Vendelin, MarkoProceedings of the Estonian Academy of Sciences2018 / p. 28-38 : ill https://doi.org/10.3176/proc.2017.4.28 http://www.ester.ee/record=b2355998*est Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Ontogeny of cardiomyocytes : ultrastructure optimization to meet the demand for tight communication in excitation–contraction coupling and energy transferBirkedal Nielsen, Rikke; Laasmaa, Martin; Branovets, Jelena; Vendelin, MarkoPhilosophical Transactions of the Royal Society B : Biological Sciences2022 / art. 20210321 https://doi.org/10.1098/rstb.2021.0321 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Optimizing ventricular fibers : uniform strain or stress, but not ATP consumption, leads to high efficiencyVendelin, Marko; Bovendeerd, Peter; Engelbrecht, Jüri; Arts, TheoAmerican journal of physiology - heart and circulatory physiology2002 / p. H1072-H1081 : ill

Rat and mouse cardiomyocytes show subtle differences in creatine kinase expression and compartmentalizationBranovets, Jelena; Soodla, Kärol; Vendelin, Marko; Birkedal Nielsen, RikkePLoS ONE2023 / art. e0294718 https://doi.org/10.1371/journal.pone.0294718

Real-time determination of sarcomere length of a single cardiomyocyte during contractionPeterson, Pearu; Kalda, Mari; Vendelin, MarkoAmerican journal of physiology - cell physiology2013 / p. C519-C531 : ill

Respiration of permeabilized cardiomyocytes from mice: no sex differences, but substrate-dependent changes in the apparent ADP-affinityKarro, Niina; Laasmaa, Martin; Vendelin, Marko; Birkedal Nielsen, RikkeScientific reports2019 / art. 12592 https://doi.org/10.1038/s41598-019-48964-x Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Restricted ADP movement in cardiomyocytes : cytosolic diffusion obstacles are complemented with a small number of open mitochondrial voltage-dependent anion channelsSimson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Peterson, Pearu; Birkedal Nielsen, Rikke; Vendelin, MarkoJournal of molecular and cellular cardiology2016 / p. 197-203 : ill https://doi.org/10.1016/j.yjmcc.2016.04.012

Revealing calcium fluxes by analyzing inhibition dynamics in action potential clampLaasmaa, Martin; Birkedal Nielsen, Rikke; Vendelin, MarkoJournal of molecular and cellular cardiology2016 / p. 93-108 : ill http://dx.doi.org/10.1016/j.yjmcc.2016.08.015

Scaled microstructure and internal variablesEngelbrecht, Jüri; Vendelin, MarkoAbstract book : Finno-Ugric International Conference on Mechanics : FUDOM 2001, May 27-June 2, Rackeve/Budapest, Hungary2001 / ? p

Sensitivity analysis of flux determination in heart by H(2) (18)O-provided labeling using a dynamic isotopologue model of energy transfer pathwaysSchryer, David; Peterson, Pearu; Illaste, Ardo; Vendelin, MarkoPLoS computational biology2012 / p. e1002795, 1-15 : ill

SüdameasjadLemba, Maris; Kongas, Olav; Vendelin, MarkoNoored teaduses2000 / lk. 62-66 : portr https://artiklid.elnet.ee/record=b2111022*est

Südameraku sisestruktuuri uurimine molekulaarse müra abilSimson, Päivo; Vendelin, MarkoTallinna Tehnikaülikooli aastaraamat 20132014 / lk. 253-256

Süsteemne lähenemine aitab mõista ka inimese südant : [intervjuu Marko Vendelin'iga]Vendelin, MarkoTeadusmõte Küberneetika Instituudis2010 / lk. 164-166 : portr

Teaduspreemia geo- ja bioteaduste alal tööde tsükli "Molekulaarne süsteemne bioenergeetika" eest : Valdur Saks (kollektiivi juht), Jüri Engelbrecht, Enn Seppet, Marko VendelinSaks, Valdur; Engelbrecht, Jüri; Seppet, Enn; Vendelin, MarkoEesti Vabariigi teaduspreemiad 20082008 / lk. 110-123 : fot., ill

Tight Coupling of Na+/K+-ATPase with glycolysis demonstrated in permeabilized rat cardiomyocytesSepp, Mervi; Sokolova, Niina; Jugai, Svetlana; Mandel, Merle; Peterson, Pearu; Vendelin, MarkoPLoS ONE2014 / art. e99413 https://doi.org/10.1371/journal.pone.0099413

Unchanged mitochondrial organization and compartmentation of high-energy phosphates in creatine-deficient GAMT(-/-) mouse heartsBranovets, Jelena; Sepp, Mervi; Kotlyarova, Svetlana; Jepihhina, Natalja; Sokolova, Niina; Aksentijevic, Dunja; Neubauer, Stefan; Lygate, Craig A.; Vendelin, Marko; Birkedal Nielsen, RikkeAmerican journal of physiology - heart and circulatory physiology2013 / p. H506-H520 : ill https://doi.org/10.1152/ajpheart.00919.2012

Using action potential clamp data to determine the calcium fluxes and contributions in excitation-contraction coupling in vivo in cardiomyocytesLaasmaa, Martin; Vendelin, Marko; Birkedal Nielsen, RikkeBiophysical journal2016 / p. 100a-101a http://dx.doi.org/10.1016/j.bpj.2015.11.600

Uued inimesed ja positsioonidTammet, Tanel; Uska, Riina; Laanearu, Janek; Tabri, Kristjan; Vendelin, Marko; Margus, Madis; Kindsigo, Merit; Talpsepp, Tõnn; Tähemaa, Toivo; Laos, Katrin; Liiv, Innar; Rüütmann, Tiia; Sarapuu, Külli; Kikkas, Kaido; Pachel, KarinMente et Manu2022 / lk. 40-49 : fot https://www.ester.ee/record=b1242496*est