Comparison and applications of label-free absolute proteome quantification methods on Escherichia coliArike, Liisa; Valgepea, Kaspar; Peil, Lauri; Nahku, Ranno; Adamberg, Kaarel; Vilu, RaivoJournal of proteomics2012 / p. 5437-5448 : ill https://pubmed.ncbi.nlm.nih.gov/22771841/

A conundrum of r-protein stability : unbalanced stoichiometry of r-proteins during stationary phase in Escherichia coliReier, Kaspar; Lahtvee, Petri-Jaan; Liiv, Aivar; Remme, JaanusmBio2022 / art. e01873-22 : ill https://doi.org/10.1128/mbio.01873-22 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Deciphering the omics of plant-microbe interaction: perspectives and new insightsSharma, Minaxi; Sudheer, Surya; Usmani, Zeba; Rani, Rupa; Gupta, PratishthaCurrent genomics2020 / p. 343-362 https://doi.org/10.2174/1389202921999200515140420 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Evaluation of enzyme-constrained genome-scale model through metabolic engineering of anaerobic co-production of 2,3-butanediol and glycerol by Saccharomyces cerevisiaeSjöberg, Gustav; Reķena, Alina; Fornstad, Matilda; Lahtvee, Petri-Jaan; Van Maris, Antionius J. A.Metabolic engineering2024 / p. 49-59 https://doi.org/10.1016/j.ymben.2024.01.007

Functional characterization of the cellular copper proteome = Rakulise vase proteoomi funtsionaalne iseloomustamineZovo, Kairit2011

Genome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloidesReķena, Alina; Pinheiro, Marina J.; Bonturi, Nemailla; Belouah, Isma; Tammekivi, Eliise; Herodes, Koit; Kerkhoven, Eduard J.; Lahtvee, Petri-JaanPLoS computational biology2023 / art. e1011009 https://doi.org/10.1371/journal.pcbi.1011009 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Genoomika, proteoomika... ehk kuhu liigub bioloogiateadus?Palumaa, PeepTallinna Tehnikaülikooli aastaraamat 20032004 / lk. 18-22

Identification and relative quantification of proteins in Escherichia coli proteome by “up-front” collision-induced dissociationArike, Liisa; Nahku, Ranno; Borissova, Maria; Adamberg, Kaarel; Vilu, RaivoEuropean journal of mass spectrometry2010 / 2, p. 227-235 https://pubmed.ncbi.nlm.nih.gov/20212332/

Identification of glycolytic proteins as binding partners of Bri2 BRICHOS domainTigro, Helene; Shimozawa, Makoto; Nilsson, Per; Lyashkov, Alexey; Khadeer, Mohammed; Järving, Ivar; Ferrucci, Luigi; Shimmo, Ruth; Johansson, Jan; Moaddel, RuinJournal of pharmaceutical and biomedical analysis2023 / art. 115465, 8 p. : ill https://doi.org/10.1016/j.jpba.2023.115465 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Integrated transcriptomic, proteomic, and metabolomics analysis reveals peel ripening of harvested banana under natural conditionYun, Ze; Li, Taotao; Gao, Huijun; Zhu, Hong; Gupta, Vijai Kumar; Jiang, Yueming; Duan, XuewuBiomolecules2019 / Art. nr. 167 https://doi.org/10.3390/biom9050167 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Lean-proteome strains - next step in metabolic engineeringValgepea, Kaspar; Peebo, Karl; Adamberg, Kaarel; Vilu, RaivoFrontiers in bioengineering and biotechnology2015 / p. 1-4 http://dx.doi.org/10.3389/fbioe.2015.00011

Metaproteomics reveals parallel utilization of colonic mucin glycans and dietary fibers by the human gut microbiotaRaba, Grete; Luis, Ana S.; Schneider, Hannah; Morell, Indrek; Jin, Chunsheng; Adamberg, Signe; Hansson, Gunnar C.; Adamberg, Kaarel; Arike, LiisaIscience2024 / art. 110093

The need for an integrated multi-OMICs approach in microbiome science in the food systemFerrocino, Ilario; Rantsiou, Kalliopi; McClure, Ryan; Kostic, Tanja; Correa de Souza, Rafael Soares; Lange, Lene; FitzGerald, Jamie; Kriaa, Aicha; Sarand, IngaComprehensive Reviews in Food Science and Food Safety2023 / p. 1082-1103 https://doi.org/10.1111/1541-4337.13103

New approaches in capillary electrophoresis for separation and study of proteins = Kapillaarelektroforeesi uued lahendused valkude lahutamisel ja uurimiselKnjazeva, Tatjana2011

Omics approaches for subcellular translation studiesKoppel, Indrek; Fainzilber, MikeMolecular omics2018 / p. 380–388 : ill http://dx.doi.org/10.1039/c8mo00172c

Quantitative proteomics of Escherichia coli : from relative to absolute scale = Kvantitatiivne Escherichia coli proteoomika : relatiivsetest numbritest absoluutsete kogusteniArike, Liisa2012 http://www.ester.ee/record=b2931221*est

Rakulise vase proteoomi süsteemibioloogiaPalumaa, Peep; Zovo, KairitXXXII Eesti Keemiapäevad : teaduskonverentsi teesid2011 / lk. 73 : ill