A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencingUntiveros, Milton; Olspert, Allan; Artola, Katrin; Firth, Andrew E.; Kreuze, Jan F.; Valkonen, Jari P.T.Molecular plant pathology2016 / p. 1111-1123 : ill https://doi.org/10.1111/mpp.12366

A potential role of alternative splicing in the regulation of the transcriptional activity of human GLI2 in gondal tissuesSpeek, Mart; Njunkova, Olga; Pata, Illar; Valdre, Eola; Kogerman, PriitBMC molecular biology2006 / 13, p. 1-13 https://pubmed.ncbi.nlm.nih.gov/16553965/

Alternative splicing of TAF4 : a dynamic switch between distinct cell functions = TAF4 alternatiivne splaising kui raku funktsioonide dünaamilise reguleerimise lülitiKazantseva, Jekaterina2014 https://www.ester.ee/record=b4437535*est

BAC transgenic mice reveal distal cis-regulatory elements governing BDNF gene expressionKoppel, Indrek; Aid-Pavlidis, Tamara; Jaanson, Kaur; Sepp, Mari; Palm, Kaia; Timmusk, TõnisGenesis2010 / 4, p. 214-219 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2978326/

Bidirectional transcription from human LRRTM2/CTNNA1 and LRRTM1/CTNNA2 gene loci leads to expression of N-terminally truncated CTNNA1 and CTNNA2 isoformsKask, Martin; Pruunsild, Priit; Timmusk, TõnisBiochemical and biophysical research communications2011 / p. 56-61 : ill https://pubmed.ncbi.nlm.nih.gov/21708131/

CCL5/CCR1 axis regulates multipotency of human adipose tissue derived stromal cellsKauts, Mari-Liis; Pihelgas, Susan; Orro, Kadri; Neuman, Toomas; Piirsoo, AllaStem Cell Research2013 / p. 166 - 178 https://doi.org/10.1016/j.scr.2012.11.004 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Cell-type-specific expression of the TFIID component TAFII135 in the nervous systemMetsis, Madis; Brunkhorst, Adrian; Neuman, ToomasExperimental cell research2001 / p. 214-221 https://www.sciencedirect.com/science/article/pii/S0014482701953078

Changes in the transcriptome of the human endometrial Ishikawa cancer cell line induced by estrogen, progesterone, tamoxifen, and mifepristone (RU486) as detected by RNA-sequencingTamm-Rosenstein, Karin; Simm, Jaak; Suhorutšenko, Marina; Salumets, Andres; Metsis, MadisPLoS ONE2013 / p. 1-13 : ill https://doi.org/10.1371/journal.pone.0068907 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Characterization of the nuclear matrix targeting sequence (NMTS) of the BPV1 E8/E2 protein - the shortest known NMTSSankovski, Eve; Karro, Kristiina; Sepp, Mari; Kurg, Reet; Ustav, Mart; Abro, AareNucleus2015 / p. 289-300 : ill http://dx.doi.org/10.1080/19491034.2015.1074359

Correction to: Transcriptome-wide identification of genes involved in Ascorbate–Glutathione cycle (Halliwell–Asada pathway) and related pathway for elucidating its role in antioxidative potential in finger millet (Eleusine coracana (L.)) (3 Biotech, (2018), 8, 12, (499), 10.1007/s13205-018-1511-9)Avashthi, Himanshu; Pathak, Rajesh Kumar; Pandey, Neetesh; Arora, Sandeep; Mishra, Amrendra Kumar; Gupta, Vijai Kumar; Ramteke, Pramod Wasudeo; Kumar, Anil3 Biotech2019 / p. 337 https://doi.org/10.1007/s13205-019-1864-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Deciphering molecular basis of Schwann cell development = Schwanni rakkude arengu molekulaarsete mehhanismide selgitaminePiirsoo, Marko; Timmusk, Tõnis; Meijer, Dies2009 https://www.ester.ee/record=b2546066*est

Dendritic localization of mammalian neuralized mRNA encoding a protein with transcription repression activitiesTimmusk, Tõnis; Palm, Kaia; Belluardo, N.; Mudo, G.; Neuman, ToomasMolecular and cellular neurosciences2002 / 4, p. 649-668 https://www.sciencedirect.com/science/article/pii/S1044743102911486

Dissecting stimulus-dependent transcription of brain-derived neurotrophic factor = Aju-päritolu neurotroofse teguri stiimulsõltuva transkriptsiooni uuringudEsvald, Eli-Eelika2023 https://doi.org/10.23658/taltech.32/2023 https://digikogu.taltech.ee/et/Item/6222c009-c82d-4efb-98c2-51bf2f148b52 https://www.ester.ee/record=b5567508*est

Human genes are transcribed from the antisense promoter of L1 retrotransposonMätlik, Kert; Nigumann, Pilvi; Redik, Kaja; Speek, MartBioinformatics 20022002 / p. 56

Identification of cis-elements and transcription factors regulating neuronal activity-dependent transcription of human BDNF genePruunsild, Priit; Sepp, Mari; Orav, Ester; Koppel, Indrek; Timmusk, TõnisThe journal of neuroscience2011 / p. 3295-3308 : ill https://pubmed.ncbi.nlm.nih.gov/21368041/

Identification of the gene transcription repressor domain of Gli3Tsanev, Robert; Tiigimägi, Piret; Michelson, Piret; Metsis, Madis; Osterlund, Torben; Kogerman, PriitFEBS letters2009 / 1, p. 224-228 : ill https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697317/

Integrated transcriptomic, proteomic, and metabolomics analysis reveals peel ripening of harvested banana under natural conditionYun, Ze; Li, Taotao; Gao, Huijun; Zhu, Hong; Gupta, Vijai Kumar; Jiang, Yueming; Duan, XuewuBiomolecules2019 / Art. nr. 167 https://doi.org/10.3390/biom9050167 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Intronic L1 retrotransposons and nested genes cause transcriptional interference by inducing intron retention, exonization and cryptic polyadenylationKaer, Kristel; Branovets, Jelena; Hallikma, Anni; Nigumann, Pilvi; Speek, MartPLoS ONE2011 / p. e26099 [20 p.] http://dx.doi.org/10.1371/journal.pone.0026099

L1 antisense promoter drives tissue-specific transcription of human genesMätlik, Kert; Redik, Kaja; Speek, MartJournal of biomedicine and biotechnology2006 / p. 71753 [16 p.] https://pubmed.ncbi.nlm.nih.gov/16877819/

LXXLL peptide converts transportan 10 to a potent inducer of apoptosis in breast cancer cellsTints, Kairit; Prink, Madis; Neuman, Toomas; Palm, KaiaInternational journal of molecular sciences2014 / p. 5680-5698 : ill https://doi.org/10.3390/ijms15045680 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Many human genes are transcribed from the antisense promoter of L1 retrotransposonNigumann, Pilvi; Redik, Kaja; Mätlik, Kert; Speek, MartGenomics2002 / 5, p. 628-634 https://pubmed.ncbi.nlm.nih.gov/11991712/

Metabolic changes underlying the higher accumulation of glutathione in Saccharomyces cerevisiae mutantsNisamedtinov, Ildar; Kevvai, Kaspar; Orumets, Kerti; Arike, Liisa; Sarand, Inga; Korhola, Matti; Paalme, ToomasApplied microbiology and biotechnology2011 / 4, p. 1029-1037 : ill https://pubmed.ncbi.nlm.nih.gov/21052993/

Mouse and rat BDNF gene structure and expression revisitedAid-Pavlidis, Tamara; Kazantseva, Anna; Piirsoo, Marko; Palm, Kaia; Timmusk, TõnisJournal of neuroscience research2007 / 3, p. 525-535 https://onlinelibrary.wiley.com/doi/full/10.1002/jnr.21139

Neurotrophins : transcription and translationWest, A. E.; Pruunsild, Priit; Timmusk, TõnisNeurotrophic factors2014 / p. 67-100 https://doi.org/10.1007/978-3-642-45106-5_4 Article collection metrics at Scopus Article at Scopus

Novel transgenic models based on bacterial artificial chromosomes for studying BDNF gene regulation = Bakteriaalsetel kunstlikel kromosoomidel põhinevad transgeensed mudelid BDNF geeni regulatsiooni uurimiseksJaanson, Kaur2015 https://www.ester.ee/record=b4494705*est

N-terminally truncated BAF57 isoforms contribute to the diversity of SWI/SNF complexes in neuronsKazantseva, Anna; Sepp, Mari; Kazantseva, Jekaterina; Sadam, Helle; Pruunsild, Priit; Timmusk, Tõnis; Neuman, Toomas; Palm, KaiaJournal of neurochemistry2009 / 3, p. 807-818 : ill https://pubmed.ncbi.nlm.nih.gov/19245665/

Nuclear factor of activated T-cells isoform c4 (NFATc4/NFAT3) as a mediator of anti-apoptotic transcription in NMDA receptor-stimulated cortical neuronsVashishta, Aruna; Habas, Agata; Pruunsild, Priit; Zheng, Jing-Juan; Timmusk, Tõnis; Hetman, MichalJournal of neuroscience2009 / 48, p. 15331-15340 https://pubmed.ncbi.nlm.nih.gov/19955386/

Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic referencesPool, Allan-Hermann; Poldsam, Helen; Chen, Sisi; Thomson, Matt; Oka, YukiNature Methods2023 / p. 1506 - 1515 https://doi.org/10.1038/s41592-023-02003-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Regulation of Gli1 transcriptional activity in the nucleus by Dyrk1Mao, J.; Maye, P.; Kogerman, PriitJournal of biological chemistry2002 / 38, p. 31156-31161 https://pubmed.ncbi.nlm.nih.gov/12138125/

Retroelements in human diseaseKaer, Kristel; Speek, MartGene2013 / p. 231-241 : ill https://doi.org/10.1016/j.gene.2013.01.008 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

The role of Enhancers in the regulation of brain-derived neurotrophic factor transcription = Enhanseralade roll aju-päritolu neurotroofse teguri transkriptsiooni regulatsioonisAvarlaid, Annela2024 https://www.ester.ee/record=b5691778*est https://digikogu.taltech.ee/et/Item/108d17a6-795d-4bc3-8e2b-95ba9585e849 https://doi.org/10.23658/taltech.34/2024

Structure and regulation of BDNF gene = BDNF geeni struktuur ja regulatsioonAid-Pavlidis, Tamara2010 http://www.ester.ee/record=b2604919*est

Structure, alternative splicing, and expression of the human and mouse KCNIP gene familyPruunsild, Priit; Timmusk, TõnisGenomics2005 / 5, p. 581-593 https://pubmed.ncbi.nlm.nih.gov/16112838/

Studies of the Drosophila basic helix-loop-helix transcription factor Daughterless and its mammalian homologue Transcription factor 4 = Äädikakärbse aluselise heeliks-ling-heeliks transkriptsioonifaktori Daughterless ja tema imetaja homoloogi Transkriptsioonifaktor 4 uuringudTamberg, Laura2023 https://doi.org/10.23658/taltech.44/2023 https://digikogu.taltech.ee/et/Item/111b86e4-abe4-47d5-8bca-af7503d4ca24 https://www.ester.ee/record=b5573303*est

Sulfoxidation regulation of Musa acuminata Calmodulin (MaCaM) influences the functions of MaCaM-binding proteinsJiang, Guoxiang; Wu, Fuwang; Li, Zhiwei; Li, Taotao; Gupta, Vijai Kumar; Duan, Xuewu; Jiang, YuemingPlant and Cell Physiology2018 / p. 1214-1224 https://doi.org/10.1093/pcp/pcy057 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Sumoylation regulates the transcriptional activity of different human NFAT isoforms in neuronsVihma, Hanna; Timmusk, TõnisNeuroscience letters2017 / p. 302-307 : ill https://doi.org/10.1016/j.neulet.2017.05.074 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Target prediction and validation of microRNAs expressed from FSHR and aromatase genes in human ovarian granulosa cellsRooda, Ilmatar; Hensen, Kati; Kaselt, Birgitta; Velthut-Meikas, AgneScientific reports2020 / art. 2300, 13 p. : ill https://doi.org/10.1038/s41598-020-59186-x Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Targeted alternative splicing of TAF4 : a new strategy for cell reprogrammingKazantseva, Jekaterina; Sadam, Helle; Neuman, Toomas; Palm, KaiaScientific reports2016 / art. 30852, p. 1-11 : ill https://doi.org/10.1038/srep30852 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Transcriptional and translational regulation of brain-derived neurotrophic factor = Aju päritolu neurotroofse teguri transkriptsiooni ja translatsiooni regulatsioonTuvikene, Jürgen2020 https://www.ester.ee/record=b5392533*est https://digikogu.taltech.ee/et/Item/4f057c26-5150-4380-a9a9-dab1ce4dc384

Transcriptional mechanisms of BDNF gene regulation = BDNF geeni avaldumise transkriptsioonilised mehhanismidKoppel, Indrek2013 https://www.ester.ee/record=b3046255*est

The transcriptional repressor domain of Gli3 is intrinsically disorderedTsanev, Robert; Vanatalu, Kalju; Jarvet, Jüri; Tanner, Risto; Laur, Kristi; Tiigimägi, Piret; Kragelund, Birthe B.; Østerlund, Torben; Kogerman, PriitPLoS ONE2013 / art. e76972 https://doi.org/10.1371/journal.pone.0076972 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

Transcriptome-wide identification of genes involved in Ascorbate–Glutathione cycle (Halliwell–Asada pathway) and related pathway for elucidating its role in antioxidative potential in finger millet (Eleusine coracana (L.))Avashthi, Himanshu; Pathak, Rajesh Kumar; Pandey, Neetesh; Arora, Sandeep; Mishra, Amrendra Kumar; Gupta, Vijai Kumar; Ramteke, Pramod Wasudeo; Kumar, Anil3 Biotech2018 / Art. nr. 499 https://doi.org/10.1007/s13205-018-1511-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

An upstream enhancer and MEF2 transcription factors fine-tune the regulation of the Bdnf gene in cortical and hippocampal neuronsAvarlaid, Annela; Falkenberg, Kaisa; Lehe, Karin; Mudo, Giuseppa; Belluardo, Natale; Di Liberto, Valentina; Frinchi, Monica; Tuvikene, Jürgen; Timmusk, TõnisJournal of biological chemistry2024 / art. 107411, 12 p. : ill https://doi.org/10.1016/j.jbc.2024.107411