ABCE1 is essential for S phase progression in human cellsToompuu, Marina; Kärblane, Kairi; Pata, Pille; Truve, Erkki; Sarmiento, CeciliaCell Cycle2016 / p. 1234 - 1247 https://doi.org/10.1080/15384101.2016.1160972 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Advancing drug–target interaction prediction: a comprehensive graph-based approach integrating knowledge graph embedding and ProtBert pretrainingDjeddi, Warith Eddine; Hermi, Khalil; Ben Yahia, Sadok; Diallo, GayoBMC Bioinformatics2023 / art. 488, 41 p.: ill https://doi.org/10.1186/s12859-023-05593-6 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Altered expression profile of igLON family of neural cell adhesion molecules in the dorsolateral prefrontal cortex of schizophrenic patientsKaris, Karina; Eskla, Kattri-Liis; Kaare, Maria; Täht, Karin; Tuusov, Jana; Visnapuu, Tanel; Innos, Jürgen; Timmusk, TõnisFrontiers in Molecular Neuroscience2018 / art. 8 https://doi.org/10.3389/fnmol.2018.00008 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Alternative splicing of DENND1A, a PCOS candidate gene, generates variant 2Tee, Meng Kian; Speek, Mart; Legeza, BalazsMolecular and cellular endocrinology2016 / p. 25-35 : ill https://doi.org/10.1016/j.mce.2016.06.011 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rateMaser, Andres; Peebo, Karl; Vilu, Raivo; Nahku, RannoResearch in microbiology2020 / p. 185−193 https://doi.org/10.1016/j.resmic.2020.02.001 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS An electrochemical biosensor for direct detection of hepatitis C virusAntipchik, Mariia; Korzhikova-Vlakh, Evgenia; Polyakov, Dmitry; Tarasenko, Irina; Reut, Jekaterina; Öpik, Andres; Sõritski, VitaliAnalytical Biochemistry2021 / art. 114196 https://doi.org/10.1016/j.ab.2021.114196 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Antifungal agents in agriculture : friends and foes of public healthBrauer, Veronica Soares; Rezende, Caroline Patini; Pessoni, Andre Moreira; De Paula, Renato Graciano; Rangappa, Kanchugarakoppal S.; Nayaka, Siddaiah Chandra; Gupta, Vijai Kumar; Almeida, FaustoBiomolecules2019 / art. 521 https://doi.org/10.3390/biom9100521 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Apolipoprotein C-II : the re-emergence of a forgotten factorWolska, Anna; Reimund, Mart; Remaley, Alan T.Current opinion in lipidology2020 / p. 147-153 https://doi.org/10.1097/MOL.0000000000000680 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Apolipoprotein C-II mimetic peptide is an efficient activator of lipoprotein lipase in human plasma as studied by a calorimetric approachReimund, Mart; Wolska, Anna; Risti, Robert; Wilson, Sierra; Sviridov, Denis O.; Remaley, Alan T.; Lõokene, AivarBiochemical and biophysical research communications2019 / p. 67-72 https://doi.org/10.1016/j.bbrc.2019.08.130 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Apolipoproteins C-I and C-III inhibit lipoprotein lipase activity by displacement of the enzyme from lipid dropletsLarsson, Mikael; Vorrsjö, Evelina; Talmund, Philippa; Lõokene, Aivar; Olivecrona, GunillaJournal of biological chemistry2013 / p. 33997-34008 : ill https://doi.org/10.1074/jbc.M113.495366 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Author Correction : DOME : recommendations for supervised machine learning validation in biologyWalsh, Ian; Fishman, Dmytro; Garcia-Gasulla, Dario; Titma, Tiina; Pollastri, GianlucaNature methods2021 / p. 1409–1410 : ill https://doi.org/10.1038/s41592-021-01304-2 Journal metrics at Scopus Article at Scopus Author Correction: SciPy 1.0 : fundamental algorithms for scientific computing in Python (Nature Methods, (2020), 17, 3, (261-272), 10.1038/s41592-019-0686-2)Virtanen, Pauli; Gommers, Ralf; Oliphant, Travis E.; Haberland, Matt; Reddy, Tyler; Cournapeau, David; Burovski, Evgeni; Peterson, Pearu; Weckesser, Warren; Bright, JonathanNature Methods2020 / p. 352 https://doi.org/10.1038/s41592-020-0772-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS The biomolecular spectrum drives microbial biology and functions in agri-food-environmentsSharma, Minaxi; Singh, Dhananjaya Pratap; Rangappa, Kanchugarakoppal S.; Stadler, Marc; Mishra, Pradeep Kumar; Silva, Roberto Nascimento; Prasad, Ram; Gupta, Vijai KumarBiomolecules2020 / art. 401 https://doi.org/10.3390/biom10030401 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Biophysical studies of the amyloid beta-peptide : interactions with metal ions and small moleculesWärmlander, Sebastian; Tiiman, Ann; Abelein, AxelChembiochem : a European journal of chemical biology2013 / p. 1692-1704 : ill https://doi.org/10.1002/cbic.201300262 Journal metrics at Scopud Article at Scopus Journal metrics at WOS Article at WOS Calorimetric approach for comparison of Angiopoietin-like protein 4 with other pancreatic lipase inhibitorsVillo, Ly; Risti, Robert; Reimund, Mart; Kukk, Kaia; Samel, Nigulas; Lõokene, AivarBiochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids2020 / art. 158553, 12 p. : ill https://doi.org/10.1016/j.bbalip.2019.158553 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Candidate cancer driver mutations in distal regulatory elements and long-range chromatin interaction networksZhu, Helen; Uusküla-Reimand, Liis; Isaev, Keren; Wadi, Lina; Alizada, Azad; Shuai, Shimin; Huang, Vincent; Aduluso-Nwaobasi, Dike; Paczkowska, Marta; Abd-Rabbo, Diala; Ocsenas, Oliver; Liang, Minggao; Thompson, J. Drew; Li, Yao; Ruan, Luyao; Krassowski, Michal; Dzneladze, Irakli; Simpson, Jared T.; Lupien, Mathieu; Stein, Lincoln D.; Boutros, Paul C.; Wilson, Michael D.; Reimand, JüriMolecular Cell2020 / p. 1307-1321.e10 https://doi.org/10.1016/j.molcel.2019.12.027 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Carbon sources influence Fumonisin production in Fusarium proliferatumLi, Taotao; Gong, Liang; Jiang, Guoxiang; Wang, Yong; Gupta, Vijai Kumar; Qu, Hongxia; Duan, Xuewu; Wang, Jiasheng; Jiang, YuemingProteomics2017 / art. 1700070, 15 p. : ill https://doi.org/10.1002/pmic.201700070 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Caseins from bovine colostrum and milk strongly bind piscidin-1, an antimicrobial peptide from fishKütt, Mary-Liis; Stagsted, JanInternational journal of biological macromolecules2014 / p. 364-372 : ill https://doi.org/10.1016/j.ijbiomac.2014.06.063 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS A catalase-related hemoprotein in coral is specialized for synthesis of short-chain aldehydes : discovery of P450-type hydroperoxide lyase activity in a catalaseTeder, Tarvi; Lõhelaid, Helike; Boeglin, William E.; Calcutt, Wade M.; Brash, Alan R.; Samel, NigulasJournal of biological chemistry2015 / p. 19823-19832 : ill https://doi.org/10.1074/jbc.M115.660282 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS The CB1 cannabinoid receptor signals striatal neuroprotection via a PI3K/Akt/mTORC1/BDNF pathwayBlazquez, C.; Chiarlone, A.; Pruunsild, Priit; Timmusk, TõnisCell death and differentiation2015 / p. 1618-1629 : ill https://doi.org/10.1038/cdd.2015.11 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Cell type-specific labelling of newly synthesized proteins by puromycin inactivationCabrera-Cabrera, Florencia; Tull, Helena; Capuana, Roberta; Kasvandik, Sergo; Timmusk, Tõnis; Koppel, IndrekJournal of biological chemistry2023 / art. 105129, 12 p. : ill https://doi.org/10.1016/j.jbc.2023.105129 Journal metrics at Scopus Article at Scopus Cellular, extracellular and extracellular vesicular miRNA profiles of pre-ovulatory follicles indicate signaling disturbances in polycystic ovariesRooda, Ilmatar; Hasan, Mohammed Mehedi; Roos, Kristine; Viil, Janeli; Smolander, Olli-Pekka; Velthut-Meikas, AgneInternational journal of molecular sciences2020 / art. 9550, 23 p. : ill https://doi.org/10.3390/ijms21249550 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Characterization of new allele influencing flowering time in bread wheat introgressed from Triticum militinaeIvaničova, Zuzana; Jakobson, Irena; Reis, Diana; Järve, KadriNew biotechnology2016 / p. 718-727 : ill https://doi.org/10.1016/j.nbt.2016.01.008 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Chrysophanol : a natural anthraquinone with multifaceted biotherapeutic potentialPrakteeksha; Yusuf, Mohd Aslam; Singh, Brahma Nand; Sudheer, Surya; Gupta, Vijai KumarBiomolecules2019 / art. 68, 24 p. : ill https://doi.org/10.3390/biom9020068 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcodingNagai, Satoshi; Sildever, Sirje; Nishi, NorikoMetabarcoding and metagenomics2022 / art. e77704 https://doi.org/10.3897/mbmg.6.77704 Journal metrics at Scopus Article at Scopus A computational approach to study functional monomer‐protein molecular interactions to optimize protein molecular imprintingBoroznjak, Roman; Reut, Jekaterina; Tretjakov, Aleksei; Lomaka, Andre; Öpik, Andres; Sõritski, VitaliJournal of molecular recognition2017 / art. e2635, p. 1-9 : ill https://doi.org/10.1002/jmr.2635 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Copper chaperones. The concept of conformational control in the metabolism of copperPalumaa, PeepFEBS letters2013 / p. 1902-1910 : ill Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Correction to: Advancing drug–target interaction prediction: a comprehensive graph-based approach integrating knowledge graph embedding and ProtBert pretraining (BMC Bioinformatics, (2023), 24, 1, (488), 10.1186/s12859-023-05593-6)Djeddi, Warith Eddine; Hermi, Khalil; Ben Yahia, Sadok; Diallo, GayoBMC Bioinformatics2024 / art. 289 https://doi.org/10.1186/s12859-024-05905-4 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS A COST Action on microbial responses to low pH : developing links and sharing resources across the academic-industrial divideAzizi, Tamir; Carvalho De Araujo, Laurine; Cetecioglu, Zeynep; Clancy, Aisha J.; Feger, Marie L.; Liran, Oded; O’Byrne, Conor; Sanka, Immanuel; Scheler, Ott; Sedlakova-Kadukova, Jana; Ziv, Carmit; De Biase, Daniela; Lund, Peter A.New biotechnology2022 / p. 64-70 https://doi.org/10.1016/j.nbt.2022.09.002 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Cryo-protective effect of an ice-binding protein derived from Antarctic bacteriaMangiagalli, Marco; Bar-Dolev, Maya; Tedesco, Pietro; Natalello, Antonino; Kaleda, AlekseiThe FEBS journal2017 / p. 163-177 : ill https://doi.org/10.1111/febs.13965 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at Scopus Cytological characterization and allelism testing of anther developmental mutants identified in a screen of maize male sterile linesTimofejeva, Ljudmilla; Skibbe, David; Lee, SidaeG3 : genes, genomes, genetics2013 / p. 231-249 : ill https://doi.org/10.1534/g3.112.004465 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Cytosporone B as a biological preservative: purification, fungicidal activity and mechanism of action against geotrichum citri-aurantiiYin, Chunxiao; Liu, Hongxin; Shan, Yang; Gupta, Vijai Kumar; Jiang, Yueming; Zhang, Weimin; Tan, Haibo; Gong, LiangBiomolecules2019 / Art. nr. 125 https://doi.org/10.3390/biom9040125 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Determination of carcinoembryonic antigen as a tumor marker using a novel graphene-based label-free electrochemical immunosensorJozghorbani, Maryam; Fathi, Mojtaba; Kazemi, Sayed Habib; Alinejadian, NavidAnalytical biochemistry2021 / art. 114017 https://doi.org/10.1016/j.ab.2020.114017 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Differential susceptibility of catheter biomaterials to biofilm-associated infections and their remedy by drug-encapsulated eudragit RL100 nanoparticlesPandey, Vivek Kumar; Srivastava, Kumar Rohit; Ajmal, Gufran; Thakur, Vijay Kumar; Gupta, Vijai Kumar; Upadhyay, Siddh Nath; Mishra, Pradeep KumarInternational Journal of Molecular Sciences2019 / Art. nr. 5110 https://doi.org/10.3390/ijms20205110 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Distinct characteristics of the substrate binding between highly homologous catalase-related allene oxide synthase and hydroperoxide lyaseTeder, Tarvi; Samel, Nigulas; Lõhelaid, HelikeArchives of biochemistry and biophysics2019 / art. 108126, 10 p. : ill https://doi.org/10.1016/j.abb.2019.108126 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Diversity in TAF proteomics : consequences for cellular differentiation and migrationKazantseva, Jekaterina; Palm, KaiaInternational journal of molecular sciences2014 / p. 16680-16697 : ill https://doi.org/10.3390/ijms150916680 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS DOME : recommendations for supervised machine learning validation in biologyWalsh, Ian; Fishman, Dmytro; Garcia-Gasulla, Dario; Titma, Tiina; Pollastri, Gianluca; Harrow, Jennifer; Psomopoulos, Fotis E.; Tosatto, Silvio C. E.Nature methods2021 / p. 1122–1127 https://doi.org/10.1038/s41592-021-01205-4 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Dual ELISA using SARS-CoV-2 N protein produced in E. coli and CHO cells reveals epitope masking by N-glycosylationRump, Airi; Risti, Robert; Kristal, Mai-Ly; Reut, Jekaterina; Sõritski, Vitali; Lõokene, Aivar; Rüütel Boudinot, SirjeBiochemical and biophysical research communications2021 / p. 457−460 https://doi.org/10.1016/j.bbrc.2020.11.060 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Effect of agitation on the peptide fibrillization: Alzheimer’s amyloid- b peptide 1-42 but not amylin and insulin fibrils can grow under quiescent conditionsTiiman, Ann; Noormägi, Andra; Friedemann, Merlin; Krištal, Jekaterina; Palumaa, Peep; Tõugu, VelloJournal of peptide science2013 / p. 386-391 : ill https://doi.org/10.1002/psc.2513 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Efficacy and epigenetic interactions of novel DNA hypomethylating agent guadecitabine (SGI-110) in preclinical models of hepatocellular carcinomaJueliger, Simone; Lyons, John; Cannito, Sara; Pata, Illar; Pata, Pille; Školnaja, MariannaEpigenetics2016 / p. 709-720 : ill https://doi.org/10.1080/15592294.2016.1214781 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Electrochemical functionalization of gold and silicon surfaces by a maleimide group as a biosensor for immunological applicationZhang, Xin; Tretjakov, Aleksei; Hovestädt, Marc; Sun, Guoguang; Sõritski, Vitali; Reut, Jekaterina; Volkmer, Rudolf; Hinrichs, Karsten; Rappich, JörgActa biomaterialia2013 / p. 5838-5844 : ill https://doi.org/10.1016/j.actbio.2012.10.022 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteinsValgepea, Kaspar; Adamberg, Kaarel; Seiman, Andrus; Vilu, RaivoMolecular biosystems2013 / p. 2344-2358 : ill https://doi.org/10.1039/c3mb70119k Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Evidence for two distinct binding sites for lipoprotein lipase on glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 (GPIHBP1)Reimund, Mart; Larsson, Mikael; Kovrov, Oleg; Kasvandik, Sergo; Olivecrona, Gunilla; Lõokene, AivarJournal of biological chemistry2015 / p. 13919-13934 : ill https://doi.org/10.1074/jbc.M114.634626 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Expression of alternative transcription factor 4 mRNAs and protein isoforms in the developing and adult rodent and human tissuesSirp, Alex; Shubina, Anastassia; Tuvikene, Jürgen; Tamberg, Laura; Kiir, Carl Sander; Kranich, Laura; Timmusk, TõnisFrontiers in Molecular Neuroscience2022 / art. 1033224 https://doi.org/10.3389/fnmol.2022.1033224 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Forkhead transcription factor FOXO3a levels are increased in Huntington disease because of overactivated positive autofeedback loopKannike, Kaja; Sepp, Mari; Zuccato, Chiara; Cattaneo, Elena; Timmusk, TõnisJournal of biological chemistry2014 / p. 32845-32857 : ill https://doi.org/10.1074/jbc.M114.612424 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Formulation of active food packaging by design: Linking composition of the film-forming solution to properties of the chitosan-based film by response surface methodology (RSM) modellingBajić, Marijan; Oberlintner, Ana; Kõrge, Kristi; Likozar, Blaž; Novak, UrošInternational Journal of Biological Macromolecules2020 / p. 971 - 978 https://doi.org/10.1016/j.ijbiomac.2020.05.186 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Functional consequences of TCF4 missense substitutions associated with Pitt-Hopkins syndrome, mild intellectual disability, and schizophreniaSirp, Alex; Roots, Kaisa; Nurm, Kaja; Tuvikene, Jürgen; Sepp, Mari; Timmusk, TõnisThe journal of biological chemistry2021 / art. 101381 https://doi.org/10.1016/j.jbc.2021.101381 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS A fungal catalase reacts selectively with the 13S fatty acid hydroperoxide products of the adjacent lipoxygenase gene and exhibits 13S-hydroperoxide-dependent peroxidase activityTeder, Tarvi; Boeglin, William E.; Schneider, Claus; Brash, Alan R.Biochimica et Biophysica Acta (BBA) - molecular and cell biology of lipids2017 / p. 706-715 : ill https://doi.org/10.1016/j.bbalip.2017.03.011 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Gene expression profiling of puberty-associated genes reveals abundant tissue and sex-specific changes across postnatal developmentHou, Huayun; Uusküla-Reimand, Liis; Makarem, Maisam; Corre, Christina; Saleh, Shems; Metcalf, Ariane; Goldenberg, Anna; Palmert, Mark R.; Wilson, Michael D.Human molecular genetics2017 / p. 3585-3599 : ill https://doi.org/10.1093/hmg/ddx246 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Genome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloidesReķena, Alina; Pinheiro, Marina J.; Bonturi, Nemailla; Belouah, Isma; Tammekivi, Eliise; Herodes, Koit; Kerkhoven, Eduard J.; Lahtvee, Petri-JaanPLoS computational biology2023 / art. e1011009 https://doi.org/10.1371/journal.pcbi.1011009 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS GLI2 cell-specific activity is controlled at the level of transcription and RNA processing : consequences to cancer metastasisSadam, Helle; Liivas, Urmas; Kazantseva, Anna; Pruunsild, Priit; Kazantseva, Jekaterina; Timmusk, Tõnis; Neuman, Toomas; Palm, KaiaBiochimica et Biophysica Acta - Molecular Basis of Disease2016 / p. 46 - 55 https://doi.org/10.1016/j.bbadis.2015.10.008 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungiÖpik, Maarja; Zobel, Martin; Metsis, MadisMycorrhiza2013 / p. 411-430 : ill https://doi.org/10.1007/s00572-013-0482-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Gly188Arg substitution eliminates substrate inhibition in arachidonate 11R-lipoxygenasePõldemaa, Kaspar; Lipp, Maarja; Järving, Ivar; Samel, Nigulas; Eek, PriitBiochemical and biophysical research communications2019 / p. 81-85 : ill https://doi.org/10.1016/j.bbrc.2019.08.132 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Graphene oxide-terminated hyperbranched amino polymer-carboxymethyl cellulose ternary nanocomposite for efficient removal of heavy metals from aqueous solutionsKong, Qiaoping; Preis, Sergei; Li, Leli; Luo, Pei; Hua, Yun; Wei, ChaohaiInternational journal of biological macromolecules2020 / p. 581−592 : ill https://doi.org/10.1016/j.ijbiomac.2020.01.185 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Heating-induced transition of Potyvirus Potato Virus A coat protein into β-structureKsenofontov, Alexander L.; Parshina, Evgenia Yu; Fedorova, Natalia V.; Arutyunyan, Alexander M.; Rumvolt, Reet; Paalme, Viiu; Baratova, Ludmila A.; Järvekülg, Lilian; Dobrov, Eugeny N.Journal of biomolecular structure and dynamics2016 / p. 250-258 : ill https://doi.org/10.1080/07391102.2015.1022604 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Identification of a small molecule that stabilizes lipoprotein lipase in vitro and lowers triglycerides in vivoLarsson, Mikael; Caraballo, Remi; Lookene, AivarBiochemical and biophysical research communications2014 / p. 1063-1069 : ill https://doi.org/10.1016/j.bbrc.2014.06.114 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Increased striatal VMAT2 binding in mice after chronic administration of methcathinone and manganeseAsser, Andres; Kõks, Sulev; Snellman, Anniina; Haaparanta-Solin, Merja; Arponen, Eveliina; Grönroos, Tove; Nairismägi, Jaak; Bergquist, Jonas; Soomets, Ursel; Piip, Piret; Eltermaa, MallBrain Research2016 / p. 97 - 102 https://doi.org/10.1016/j.brainres.2016.09.034 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Integrated transcriptomic, proteomic, and metabolomics analysis reveals peel ripening of harvested banana under natural conditionYun, Ze; Li, Taotao; Gao, Huijun; Zhu, Hong; Gupta, Vijai Kumar; Jiang, Yueming; Duan, XuewuBiomolecules2019 / Art. nr. 167 https://doi.org/10.3390/biom9050167 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathwaysPey, Jon; Valgepea, Kaspar; Rubio, Angel; Beasley, John E; Planes, Francisco JavierBMC Systems Biology2013 / art. 134 https://doi.org/10.1186/1752-0509-7-134 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Interactome rewiring following pharmacological targeting of BET bomodomainsLambert, Jean-Philippe; Picaud, Sarah; Fujisawa, Takao; Uusküla-Reimand, LiisMolecular cell2019 / p. 621-638.e17 : ill https://doi.org/10.1016/j.molcel.2018.11.006 Jornal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Isolated Potato Virus A coat protein possesses unusual properties and forms different short virus-like particlesKsenofontov, Alexander L.; Dobrov, Eugeny N.; Fedorova, Natalia V.; Paalme, Viiu; Järvekülg, LilianJournal of biomolecular structure and dynamics2017 / p. 1-11 : ill https://doi.org/10.1080/07391102.2017.1333457 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Leptin increases hepatic triglyceride export via a vagal mechanism in humansMetz, Matthäus; Beghini, Marianna; Wolf, Peter; Pfleger, Lorenz; Hackl, Martina; Bastian, Magdalena; Freudenthaler, Angelika; Harreiter, Jürgen; Risti, Robert; Lõokene, AivarCell Metabolism2022 / p. 1719-1731 https://doi.org/10.1016/j.cmet.2022.09.020 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS LXXLL peptide converts transportan 10 to a potent inducer of apoptosis in breast cancer cellsTints, Kairit; Prink, Madis; Neuman, Toomas; Palm, KaiaInternational journal of molecular sciences2014 / p. 5680-5698 : ill https://doi.org/10.3390/ijms15045680 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Melinacidin-producing Acrostalagmus luteoalbus, a major constituent of mixed mycobiota contaminating insulation material in an outdoor wallAndersson, Maria A.; Salo, Johanna; Mikkola, Raimo; Marik, Tamas; Kredics, Laszlo; Kurnitski, Jarek; Salonen, HeidiPathogens2021 / art. 843 https://doi.org/10.3390/pathogens10070843 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Mercury and Alzheimer’s disease: Hg(II) ions display specific binding to the amyloid-β peptide and hinder its fibrillizationWallin, Cecilia; Friedemann, Merlin; Sholts, Sabrina B.; Noormägi, Andra; Svantesson, Teodor; Järvet, Jüri; Roos, Per M.; Palumaa, Peep; Gräslund, Astrid; Wärmländer, Sebastian K.T.S.Biomolecules2020 / art. 44, 23 p. : ill https://doi.org/10.3390/biom10010044 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Metals in ALS TDP-43 pathologyKoski, Lassi; Ronnevi, Cecilia; Berntsson, Elina; Wärmländer, Sebastian K. T. S.; Roos, Per M.International Journal of Molecular Sciences2021 / Art. nr. 12193 https://doi.org/10.3390/ijms222212193 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Microbial beta glucosidase enzymes : recent advances in biomass conversation for biofuels applicationSrivastava, Neha; Rathour, Rishabh; Jha, Sonam; Pandey, Karan; Srivastava, Manish; Thakur, Vijay Kumar; Sengar, Rakesh Singh; Gupta, Vijai Kumar; Mazumder, Pranab Behari; Khan, Ahamad Faiz; Mishra, Pradeep KumarBiomolecules2019 / art. 220 https://doi.org/10.3390/biom9060220 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Microbiome interconnectedness throughout environments with major consequences for healthy people and a healthy planetSessitsch, Angela; Wakelin, Steve; Schloter, Michael; Maguin, Emmanuelle; Cernava, Tomislav; Champomier-Verges, Marie-Christine; Charles, Trevor C.; Cotter, Paul D.; Ferrocino, Ilario; Kriaa, Aicha; Lebre, Pedro; Cowan, Don; Lange, Lene; Kiran, Seghal; Markiewicz, Lidia; Meisner, Annelein; Olivares, Marta; Sarand, Inga; Schelkle, Bettina; Selvin, Joseph; Smidt, Hauke; van Overbeek, Leo; Berg, Gabriele; Cocolin, Luca; Sanz, Yolanda; Fernandes, Wilson Lemos; Liu, S. J.; Ryan, Matthew; Singh, Brajesh; Kostic, TanjaMicrobiology and molecular biology reviews2023 https://doi.org/10.1128/mmbr.00212-22 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Molecular mechanism of mitoquinol mesylate in mitigating the progression of hepatocellular carcinoma - in silico and in vivo studiesSulaimon, Lateef Adegboyega; Adisa, Rahmat Adetutu; Samuel, Titilola Aderonke; Joel, Ireoluwa Yinka; Ayankojo, Akinrinade George; Abdulkareem, Fatimah Biade; Olaniyi, Timothy OlajireJournal of Cellular Biochemistry2021 / p. 1157-1172 https://doi.org/10.1002/jcb.29937 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Monitoring harmful microalgal species and their appearance in Tokyo Bay, Japan, using metabarcodingSildever, Sirje; Nishi, Noriko; Inaba, Nobuharu; Asakura, Taiga; Kikuchi, Jun; Asano, Yasuhito; Kobayashi, Takanori; Gojobori, Takashi; Nagai, SatoshiMetabarcoding and metagenomics2022 / art. e79471 https://doi.org/10.3897/mbmg.6.79471 Journal metrics at Scopus Article at Scopus Mucin utilization by gut microbiota : recent advances on characterization of key enzymesRaba, Grete; Luis, Ana S.Essays in Biochemistry2023 / p. 345–353 : ill https://doi.org/10.1042/EBC20220121 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS NMR assignment of methyl groups in immobilized proteins using multiple-bond 13C homonuclear transfers, proton detection, and very fast MASPaluch, Piotr; Augusyniak, Rafal; Org, Mai-Liis; Vanatalu, Kalju; Kaldma, Ats; Samoson, Ago; Stanek, JanFrontiers in Molecular Biosciences2022 / Art. 828785 https://doi.org/10.3389/fmolb.2022.828785 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Non-invasive assessment of skin surface proteins of psoriasis vulgaris patients in response to biological therapyOrro, Kadri; Salk, Kristiina; Merkulova, Anna; Abram, Kristi; Karelson, Maire; Traks, Tanel; Neuman, Toomas; Spee, Pieter; Kingo, KülliInternational Journal of Molecular Sciences2023 / art. 16248 https://doi.org/10.3390/ijms242216248 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Non-toxic and ultra-small biosilver nanoclusters trigger apoptotic cell death in fluconazole-resistant Candida albicans via Ras signalingPrakteeksha; Singh, Braj R.; Gupta, Vijai Kumar; Deeba, Farah; Gathergood, NicholasBiomolecules2019 / art. 47, 23 p. : ill https://doi.org/10.3390/biom9020047 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Novel membrane-associated prostaglandin E synthase-2 from crustacean arthropodsHansen, Kristella; Varvas, Külliki; Järving, Ivar; Samel, NigulasComparative biochemistry and physiology. Part B, Biochemistry and molecular biology2014 / p. 45-52 : ill https://doi.org/10.1016/j.cbpb.2014.05.004 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Nucleolar enrichment of brain proteins with critical roles in human neurodevelopmentSlomnicki, Lukasz P.; Malinowska, Agata; Sepp, Mari; Timmusk, TõnisMolecular & cellular proteomics2016 / p. 2055-2075 https://doi.org/10.1074/mcp.M115.051920 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS P75 neurotrophin receptor signaling activates sterol regulatory element-binding protein-2 in hepatocyte cells via p38 mitogen-activated protein kinase and caspase-3Pham, Dan Duc; Do, Hai Thi; Bruelle, Céline; Kukkonen, Jyrki P.; Eriksson, Ove; Mogollón, Isabel; Korhonen, Laura T.; Arumäe, Urmas; Lindholm, DanJournal of Biological Chemistry2016 / p. 10747 - 10758 https://doi.org/10.1074/jbc.M116.722272 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS PCSK9 deficiency alters brain lipid composition without affecting brain development and functionPärn, Angela; Olsen, Ditte; Tuvikene, Jürgen; Kaas, Mathias; Borisova, Ekaterina; Bilgin, Mesut; Elhauge, Mie; Vilstrup, Joachim; Madsen, Peder; Ambrozkiewicz, Mateusz C.; Goz, Roman U.; Timmusk, Tõnis; Tarabykin, Victor; Gustafsen, Camilla; Glerup, SimonFrontiers in molecular neuroscience2023 / art. 1084633 https://doi.org/10.3389/fnmol.2022.1084633 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS A PDZ-like domain mediates the dimerization of 11R-lipoxygenaseEek, Priit; Põldemaa, Kaspar; Kasvandik, Sergo; Järving, Ivar; Samel, NigulasBiochimica et Biophysica Acta (BBA) - molecular and cell biology of lipids2017 / p. 1121-1128 : ill https://doi.org/10.1016/j.bbalip.2017.07.012 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS PGC-1α signaling increases GABA(A) receptor subunit α2 expression, GABAergic neurotransmission and anxiety-like behavior in miceVanaveski, Taavi; Molchanova, Svetlana; Pham, Dan Duc; Schäfer, Annika; Pajanoja, Ceren; Narvik, Jane; Srinivasan, Vignesh; Urb, Mari; Koivisto, Maria; Timmusk, TõnisFrontiers in Molecular Neuroscience2021 / art. 588230 https://doi.org/10.3389/fnmol.2021.588230 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Plankton biodiversity and species co-occurrence based on environmental DNA - a multiple marker studySildever, Sirje; Laas, Peeter; Kolesova, Natalja; Lips, Inga; Lips, Urmas; Nagai, SatoshiMetabarcoding and metagenomics2021 / p. 175-197 : ill https://doi.org/10.3897/mbmg.5.72371 Journal metrics at Scopus Article at Scopus Probing determinants of cyclopiazonic acid sensitivity of bacterial Ca 2+-ATPasesKotšubei, Aljona; Gorgel, Manuela; Morth, Jens P.; Nissen, Poul; Andersen, Jacob L.FEBS Journal2013 / p. 5441 - 5449 https://doi.org/10.1111/febs.12310 Journal metrics at Scopus Article at Scopus Protein kinase inhibitor SU6668 attenuates positive regulation of Gli proteins in cancer and multipotent progenitor cellsPiirsoo, Alla; Kasak, Lagle; Kauts, Mari-Liis; Uusen, Piia; Tints, Kairit; Loog, Mart; Neuman, Toomas; Piirsoo, MarkoBiochimica et biophysica acta : molecular cell research2014 / p. 703-714 : ill https://doi.org/10.1016/j.bbamcr.2014.01.003 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Protein NMR spectroscopy at 150 kHz magic-angle spinning continues to improve resolution and mass sensitivitySchledorn, Maarten; Malär, Alexander A.; Torosyan, Anahit; Oss, Andres; Org, Mai-Liis; Samoson, AgoChembiochem : a European journal of chemical biology2020 / p. 2540-2548 https://doi.org/10.1002/cbic.202000341 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at Scopus Protein trafficking abnormalities in Drosophila tissues with impaired activity of the ZIP7 zinc transporter CatsupSasamura, Takeshi; Groth, Casper; Khanna, Mansi R.; Whitley, Michael; Fortini, Mark E.Development (Cambridge)2013 / p. 3018 - 3027 https://doi.org/10.1242/dev.088336 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic referencesPool, Allan-Hermann; Poldsam, Helen; Chen, Sisi; Thomson, Matt; Oka, YukiNature Methods2023 / p. 1506 - 1515 https://doi.org/10.1038/s41592-023-02003-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Research resource : small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genesVelthut, Agne; Simm, Jaak; Tuuri, Timo; Tapanainen, Juha S.; Metsis, Madis; Salumets, AndresMolecular endocrinology2013 / p. 1128-1141 : ill https://doi.org/10.1210/me.2013-1058 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Restricted ADP movement in cardiomyocytes : cytosolic diffusion obstacles are complemented with a small number of open mitochondrial voltage-dependent anion channelsSimson, Päivo; Jepihhina, Natalja; Laasmaa, Martin; Peterson, Pearu; Birkedal Nielsen, Rikke; Vendelin, MarkoJournal of molecular and cellular cardiology2016 / p. 197-203 : ill https://doi.org/10.1016/j.yjmcc.2016.04.012 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Revealing calcium fluxes by analyzing inhibition dynamics in action potential clampLaasmaa, Martin; Birkedal Nielsen, Rikke; Vendelin, MarkoJournal of molecular and cellular cardiology2016 / p. 93-108 : ill https://doi.org/10.1016/j.yjmcc.2016.08.015 Journal metrics at Scopus Article at Scopus Article at WOS Revisiting the expression of BDNF and its receptors in mammalian developmentEsvald, Eli-Eelika; Tuvikene, Jürgen; Kiir, Carl Sander; Avarlaid, Annela; Tamberg, Laura; Sirp, Alex; Shubina, Anastassia; Cabrera-Cabrera, Florencia; Pihlak, Arno; Koppel, Indrek; Palm, Kaia; Timmusk, TõnisFrontiers in Molecular Neuroscience2023 / art. 1182499 https://doi.org/10.3389/fnmol.2023.1182499 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Safeguarding female reproductive health against endocrine disrupting chemicals-The FREIA projectDuursen, Majorie B.M. van; Boberg, Julie; Christiansen, Sofie; Jääger, Kersti; Salumets, Andres; Velthut-Meikas, AgneInternational journal of molecular sciences2020 / art. 3215 https://doi.org/10.3390/ijms21093215 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS SciPy 1.0 : fundamental algorithms for scientific computing in PythonVirtanen, Pauli; Gommers, Ralf; Oliphant, Travis E.; Haberland, Matt; Reddy, Tyler; Cournapeau, David; Burovski, Evgeni; Peterson, PearuNature methods2020 / p. 261-272 https://doi.org/10.1038/s41592-019-0686-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Secretome profiling reveals virulence-associated proteins of Fusarium proliferatum during interaction with banana fruitLi, Taotao; Wu, Yu; Wang, Yong; Gao, Haiyan; Gupta, Vijai Kumar; Duan, Xuewu; Qu, Hongxia; Jiang, YuemingBiomolecules2019 / Art. nr. 246 https://doi.org/10.3390/biom9060246 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Serum levels and removal by haemodialysis and haemodiafiltration of tryptophan-derived uremic toxins in ESKD patientsPaats, Joosep; Adoberg, Annika; Arund, Jürgen; Fridolin, Ivo; Leis, Liisi; Luman, Merike; Pilt, Kristjan; Uhlin, Nils Fredrik ArneInternational journal of molecular sciences2020 / art. 1522, 19 p. : ill https://doi.org/10.3390/ijms21041522 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Spermatozoa induce transcriptomic alterations in bovine oviductal epithelial cells prior to initial contactReshi, Qurat Ul Ain; Viil, Janeli; Ord, James; Lättekivi, Freddy; Godakumara, Kasun; Hasan, Mohammed Mehedi; Nõmm, Monika; Jääger, Kersti; Velthut-Meikas, Agne; Jaakma, Ülle; Salumets, Andres; Fazeli, AlirezaJournal of cell communication and signaling2020 / p. 439–451 https://doi.org/10.1007/s12079-020-00575-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Structural and catalytic insights into the algal prostaglandin H synthase reveal atypical features of the first non-animal cyclooxygenaseVarvas, Külliki; Kasvandik, Sergo; Hansen, Kristella; Järving, Ivar; Morell, Indrek; Samel, NigulasBiochimica et biophysica acta : molecular and cell biology of lipids2013 / p. 863-871 : ill https://doi.org/10.1016/j.bbalip.2012.11.010 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Structure of a bacterial ice binding protein with two faces of interaction with iceMangiagalli, Marco; Sarusi, Guy; Kaleda, Aleksei; Bar Dolev, MayaThe FEBS journal2018 / p. 1653-1666 : ill https://doi.org/10.1111/febs.14434 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS TAC-seq : targeted DNA and RNA sequencing for precise biomarker molecule countingTeder, Hindrek; Koel, Mariann; Paluoja, Priit; Velthut-Meikas, Agnenpj genomic medicine2018 / art. 34, 8 p. : ill https://doi.org/10.1038/s41525-018-0072-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localizationDoron-Mandel, Ella; Koppel, Indrek; Abraham, Ofri; Rishal, IdaThe EMBO Journal2021 / art. e107158 https://doi.org/10.15252/embj.2020107158 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS The initiation of free radical peroxidation of low-density lipoproteins by glucose and its metabolite methylglyoxal: A common molecular mechanism of vascular wall injure in atherosclerosis and diabetesLankin, Vadim Z.; Konovalova, Galina G.; Tikhaze, Alla K.; Shumaev, Konstantin; Kumskova, Elena; Viigimaa, MargusMolecular and cellular biochemistry2014 / p. 241-252 : ill https://doi.org/10.1007/s11010-014-2131-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS The role of initial oligomers in amyloid fibril formation by human stefin BTaler-Verčič, Ajda; Kirsipuu, Tiina; Friedemann, Merlin; Noormägi, Andra; Smirnova, Julia; Palumaa, PeepInternational journal of molecular sciences2013 / p. 18362-18384 : ill https://doi.org/10.3390/ijms140918362 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Thermal stability of red algal galactans: Effect of molecular structure and counterionsRobal, Marju; Truus, Kalle; Volobujeva, Olga; Mellikov, Enn; Tuvikene, RandoInternational journal of biological macromolecules2017 / p. 213-223 : ill https://doi.org/10.1016/j.ijbiomac.2017.05.175 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS uCARE Chem Suite and uCAREChemSuiteCLI : tools for bacterial resistome predictionSaha, Saurav Bhaskar; Gupta, Vijai Kumar; Ramteke, Pramod WasudeoGenes and Diseases2021 / p. 721 - 729 https://doi.org/10.1016/j.gendis.2020.06.008 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Untranslated regions of brain-derived neurotrophic factor (Bdnf) mRNA control its translatability and subcellular localizationLekk, Ingrid; Cabrera-Cabrera, Florencia; Turconi, Giorgio; Tuvikene, Jürgen; Esvald, Eli-Eelika; Rähni, Annika; Casserly, Laoise; Garton, Daniel R.; Andressoo, Jaan-Olle; Timmusk, Tõnis; Koppel, IndrekThe journal of biological chemistry2023 / art. 102897 https://doi.org/10.1016/j.jbc.2023.102897 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Utilization of 15N-labelled yeast hydrolysate in Lactococcus lactis IL1403 culture indicates co-consumption of peptide-bound and free amino acids with simultaneous efflux of free amino acidsKevvai, Kaspar; Kütt, Mary-Liis; Nisamedtinov, Ildar; Paalme, ToomasAntonie van Leeuwenhoek, International Journal of General and Molecular Microbiology2014 / p. 511-522 : ill https://doi.org/10.1007/s10482-013-0103-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS Variations on the theme of podosomes : A matter of contextAlonso, Florian; Spuul, Pirjo; Daubon, ThomasBiochimica et biophysica acta : molecular cell research2019 / p. 545-553 : ill https://doi.org/10.1016/j.bbamcr.2018.12.009 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS