• Analysis of soil sample metagenome as an additional tool for forensicsAaspõllu, Anu; Lilje, Liisa; Simm, Jaak; Kägo, Esta; Sipp Kulli, Sirli; Moora, Mari; Zobel, Martin; Metsis, MadisIAFS 2011 - 19th International Association of Forensic Sciences : 12. - 17.09.2011, Madeira, Portugal2011 / p. 42
• Bitcoin - odav ja kiire küberrahaSimm, JaakArvutimaailm2011 / 9, lk. 50-51 : ill
• Can microbes on skin help linking persons and crimes?Aaspõllu, Anu; Lillsaar, Triin; Tummeleht, Lea; Simm, Jaak; Metsis, MadisForensic science international : genetics supplement series2011 / 1, p. e269-e270 : ill http://dx.doi.org/doi:10.1016/j.fsigss.2011.08.131
• Changes in the transcriptome of the human endometrial Ishikawa cancer cell line induced by estrogen, progesterone, tamoxifen, and mifepristone (RU486) as detected by RNA-sequencingTamm-Rosenstein, Karin; Simm, Jaak; Suhorutšenko, Marina; Salumets, Andres; Metsis, MadisPLoS ONE2013 / p. 1-13 : ill https://doi.org/10.1371/journal.pone.0068907 https://www.scopus.com/sourceid/10600153309 https://www.scopus.com/record/display.uri?eid=2-s2.0-84880498103&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1371%2Fjournal.pone.0068907%29&sessionSearchId=fc706d6593399b616dd932e591493e19&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=PLOS%20ONE&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000322064300078
• Characterization of the vaginal micro- and mycobiome in asymptomatic reproductive-age Estonian womenDrell, Tiina; Lillsaar, Triin; Tummleht, Lea; Simm, Jaak; Aaspõllu, Anu; Väin, Edda; Saarma, Ivo; Salumets, Andres; Donders, Gilbert G. G.; Metsis, MadisPLoS ONE2013 / p. 1-11 : ill https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0054379 https://doi.org/10.1371/journal.pone.0054379 https://www.scopus.com/sourceid/10600153309 https://www.scopus.com/record/display.uri?eid=2-s2.0-84872765293&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1371%2Fjournal.pone.0054379%29&sessionSearchId=98937f96d830fb637905a6bd63cedb98&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MYCORRHIZA&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000320329000008
• Computationally efficient multi-task learning with least-squares probabilistic classifiersSimm, Jaak; Sugiyama, Masashi; Kato, TsuyoshiIPSJ transactions on computer vision and applications2011 / Feb., [8] p. : ill https://www.researchgate.net/publication/215704981_Computationally_Efficient_Multi-task_Learning_with_Least-Squares_Probabilistic_Classifiers
• Differences in gut microbiota between atopic and healthy childrenDrell, Tiina; Larionova, Anneli; Voor, Tiia; Simm, Jaak; Julge, Kaja; Heilman, Kaire; Tillmann, Vallo; Štšepetova, Jelena; Sepp, EppCurrent Microbiology2015 / p. 177-183 https://doi.org/10.1007/s00284-015-0815-9
• Diversity and stability of lactic acid bacteria in rye sourdoughs of four bakeries with different propagation parametersViiard, Ene; Bessmeltseva, Marianna; Simm, Jaak; Talve, Tiina; Aaspõllu, Anu; Paalme, Toomas; Sarand, IngaPLoS ONE2016 / art. e0148325 https://doi.org/10.1371/journal.pone.0148325 https://www.scopus.com/sourceid/10600153309 https://www.scopus.com/record/display.uri?eid=2-s2.0-84959248787&origin=resultslist&sort=plf-f&src=s&sid=4202698309a71b195882010a6331aa3a&sot=b&sdt=b&s=TITLE%28%22Diversity+and+stability+of+lactic+acid+bacteria+in+rye+sourdoughs+of+four+bakeries+with+different+propagation+parameters%22%29&sl=129&sessionSearchId=4202698309a71b195882010a6331aa3a&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=PLOS%20ONE&year=2016 https://www.webofscience.com/wos/woscc/full-record/WOS:000369554000067
• Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transferAltmäe, Signe; Tamm-Rosenstein, Karin; Esteban, Francisco J.; Simm, Jaak; Kolberg, Liis; Peterson, Hedi; Metsis, MadisReproductive BioMedicine Online2016 / p. 597 - 613 https://doi.org/10.1016/j.rbmo.2016.03.004 https://www.scopus.com/sourceid/28161 https://www.scopus.com/record/display.uri?eid=2-s2.0-84963667992&origin=resultslist&sort=plf-f&src=s&sid=4202698309a71b195882010a6331aa3a&sot=b&sdt=b&s=DOI%2810.1016%2Fj.rbmo.2016.03.004%29&sl=129&sessionSearchId=4202698309a71b195882010a6331aa3a&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=REPROD%20BIOMED%20ONLINE&year=2016 https://www.webofscience.com/wos/woscc/full-record/WOS:000377393600006
• Evolution of bacterial consortia in spontaneously started rye sourdoughs during two months of daily propagationBessmeltseva, Marjanna; Viiard, Ene; Simm, Jaak; Paalme, Toomas; Sarand, IngaPLoS ONE2014 / p. 1-12 : ill https://doi.org/10.1371/journal.pone.0095449 https://www.scopus.com/sourceid/10600153309 https://www.scopus.com/record/display.uri?eid=2-s2.0-84899695744&origin=inward&txGid=f351de38d78fd3443f7040914e0ee1ec https://jcr.clarivate.com/jcr-jp/journal-profile?journal=PLOS%20ONE&year=2014 https://www.webofscience.com/wos/woscc/full-record/WOS:000335226500103
• Genes regulated by estrogen and progesterone in human endometrium = Östradiooli ja progesterooni reguleeritud geenid inimese endomeetriumisRosenstein, Karin2016 https://www.ester.ee/record=b4567260*est
• High-throughput sequencing approach uncovers the miRNome of peritoneal endometriotic lesions and adjacent healthy tissuesSaare, Merli; Rekker, Kadri; Laisk-Podar, Triin; Sõritsa, Deniss; Roost, Anne Mari; Simm, Jaak; Velthut-Meikas, Agne; Samuel, Külli; Metsalu, Tauno; Karro, HellePLoS ONE2014 / art. e112630, 9 p. : ill https://doi.org/10.1371/journal.pone.0112630 https://www.scopus.com/sourceid/10600153309 https://www.scopus.com/record/display.uri?eid=2-s2.0-84918825064&origin=inward&txGid=f62bf627156eb0242e8b2f75f348de4c https://jcr.clarivate.com/jcr-jp/journal-profile?journal=PLOS%20ONE&year=2014 https://www.webofscience.com/wos/woscc/full-record/WOS:000345250400075
• Improving the accuracy of least-squares probabilistic classifiersYamada, Makoto; Sugiyama, Masashi; Wichern, Gordon; Simm, JaakIEICE technical reports2010 / p. 45-50 http://www.ms.k.u-tokyo.ac.jp/sugi/2011/LSPCnew.pdf
• Multi-task learning with least-squares probabilistic classifiersSimm, Jaak; Sugiyama, Masashi; Kato, TsuyoshiIEICE technical reports2010 / p. 51-56 https://www.ieice.org/publications/ken/summary.php?contribution_id=KJ00006872689&society_cd=ISS&ken_id=PRMU&year=2010&presen_date=2010/8/29&schedule_id=AN10541106_110(187)&lang=en&expandable=3
• Near-bottom hypoxia impacts dynamics of bacterioplankton assemblage throughoutwater column of the Gulf of Finland (Baltic Sea)Laas, Peeter; Šatova, Elina; Lips, Inga; Lips, Urmas; Simm, Jaak; Kisand, Veljo; Metsis, MadisPLoS ONE2016 / art. e0156147, p. 1-19 : ill https://doi.org/10.1371/journal.pone.0156147 https://www.scopus.com/sourceid/10600153309 https://www.scopus.com/record/display.uri?eid=2-s2.0-84971367800&origin=inward&txGid=4a54ac67a0f7c5ff4f6d89a7a4c0bdaf https://jcr.clarivate.com/jcr-jp/journal-profile?journal=PLOS%20ONE&year=2016 https://www.webofscience.com/wos/woscc/full-record/WOS:000376880200060
• Redox-specialized bacterioplankton metacommunity in a temperate estuaryLaas, Peeter; Simm, Jaak; Lips, Inga; Lips, Urmas; Kisand, Veljo; Metsis, MadisPLoS ONE2015 / art. e0122304 https://doi.org/10.1371/journal.pone.0122304
• Research resource : small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genesVelthut, Agne; Simm, Jaak; Tuuri, Timo; Tapanainen, Juha S.; Metsis, Madis; Salumets, AndresMolecular endocrinology2013 / p. 1128-1141 : ill https://doi.org/10.1210/me.2013-1058 https://www.scopus.com/sourceid/26208 https://www.scopus.com/record/display.uri?eid=2-s2.0-84879490996&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1210%2Fme.2013-1058%29&sessionSearchId=c42962733a94ae09ac921c72c691ac9c&relpos=0 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=MOL%20ENDOCRINOL&year=2013 https://www.webofscience.com/wos/woscc/full-record/WOS:000321101700010
• Soil sample metagenome NGS data management for forensic investigationLilje, Liisa; Lillsaar, Triin; Rätsep, Ranno; Simm, Jaak; Aaspõllu, AnuForensic science international : genetics supplement series2013 / p. e35-e36 : ill https://doi.org/10.1016/j.fsigss.2013.10.017 https://www.scopus.com/sourceid/12100155401 https://www.scopus.com/record/display.uri?eid=2-s2.0-84889879479&origin=resultslist&sort=plf-f&src=s&sot=b&sdt=b&s=DOI%2810.1016%2Fj.fsigss.2013.10.017%29&sessionSearchId=5df1214cf0e638f2a2a9288596284893
• Spatial variability of winter bacterioplankton community composition in the Gulf of Finland (the Baltic Sea)Laas, Peeter; Simm, Jaak; Lips, Inga; Metsis, MadisJournal of marine systems2014 / p. 127-134 : ill https://doi.org/10.1016/j.jmarsys.2013.07.016 https://www.scopus.com/sourceid/27786 https://www.scopus.com/record/display.uri?eid=2-s2.0-84888400699&origin=inward&txGid=55c8ff1ccb163551c95f8285748ee9fe https://jcr.clarivate.com/jcr-jp/journal-profile?journal=J%20MARINE%20SYST&year=2014 https://www.webofscience.com/wos/woscc/full-record/WOS:000329881600013
• The complex microbiome from native semen to embryo culture environment in human in vitro fertilization procedureŠtšepetova, Jelena; Baranova, Juliana; Simm, Jaak; Parm, ÜlleReproductive biology and endocrinology2020 / art. 3, 13 p. : ill https://doi.org/10.1186/s12958-019-0562-z https://www.scopus.com/sourceid/26698 https://www.scopus.com/record/display.uri?eid=2-s2.0-85078024128&origin=inward&txGid=7f4720c3cd44ca4c8fa7f8c3e21f28a5 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=REPROD%20BIOL%20ENDOCRIN&year=2022 https://www.webofscience.com/wos/woscc/full-record/WOS:000513706400001
• The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencingDrell, Tiina; Lutsar, Irja; Štšepetova, Jelena; Parm, Ülle; Metsvaht, Tuuli; Ilmoja, Mari-Liis; Simm, Jaak; Sepp, EppGut Microbes2014 / p. 304-503 : ill https://doi.org/10.4161/gmic.28849 https://www.scopus.com/sourceid/19700175861 https://www.scopus.com/record/display.uri?eid=2-s2.0-84901370914&origin=inward&txGid=693b5c691c3b075f5ffaf6ad702cc430 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=GUT%20MICROBES&year=2018 https://www.webofscience.com/wos/woscc/full-record/WOS:000457429800009
• The infuence of diferent maternal microbial communities on the development of infant gut and oral microbiotaDrell, Tiina; Štšepetova, Jelena; Simm, Jaak; Rull, Kristiina; Aleksejeva, Aira; Antson, Anne; Tillmann, Vallo; Metsis, Madis; Sepp, Epp; Salumets, Andres; Mändar, ReetScientific reports2017 / art. 9940, p. 1-9 : ill https://doi.org/10.1038/s41598-017-09278-y https://www.scopus.com/sourceid/21100200805 https://www.scopus.com/record/display.uri?eid=2-s2.0-85028585815&origin=inward&txGid=3cc0fb05710545f7f9b239fbad9c2d89 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=SCI%20REP-UK&year=2017 https://www.webofscience.com/wos/woscc/full-record/WOS:000408622400034
• The potential role of dioxin analogues in prostate cancer and male infertility - preliminary study using LNCaP cell lineSuhorutšenko, Marina; Tamm-Rosenstein, Karin; Simm, Jaak; Salumets, Andres; Metsis, MadisHuman reproduction2013 / p. i310-i311
• The tissue specific role of estrogen and progesterone in human endometrium and mammary glandTamm, Karin; Suhorutšenko, Marina; Rõõm, Miia; Simm, Jaak; Metsis, MadisSteroids : basic science2012 / p. 35-64 : ill https://eestiarst.ee/en/the-tissue-specific-role-of-oestrogen-and-progesterone-in-human-endometrium-and-mammary-gland/
• Tree-based ensemble multi-task learning method for classification and regressionSimm, Jaak; de Abril, Ildefons Magrans; Sugiyma, MasashiNew directions in transfer and multi-task : learning across domains and tasks2013 / [5] p. : ill
• Tree-based ensemble multi-task learning method for classification and regressionSimm, Jaak; Magrans De Abril, Ildefons; Sugiyma, MasashiIEICE transactions on information and systems2014 / p. 1677-1681 https://doi.org/10.1587/transinf.E97.D.1677 https://www.scopus.com/sourceid/15109 https://www.scopus.com/record/display.uri?eid=2-s2.0-84901811232&origin=inward&txGid=8ab426f60c181e0444307af6851f3794 https://jcr.clarivate.com/jcr-jp/journal-profile?journal=IEICE%20T%20INF%20SYST&year=2014 https://www.webofscience.com/wos/woscc/full-record/WOS:000342784300036
• TTÜ teadusarvutuste klasterSimm, JaakStudioosus2013 / lk. 23 https://www.ester.ee/record=b1558644*est
• Vaginal microbiota of asymptomatic reproductive-age women in EstoniaDrell, Tiina; Lillsaar, Triin; Tummeleht, Lea; Simm, Jaak; Väin, E.; Saarma, I.; Metsis, MadisKeystone Symposia on Molecular and Cellular Biology, Colorado, USA, March 25-30 20112011
• Veelkord TTÜ teadusarvustuste klastristSimm, JaakStudioosus2013 / lk. 24 https://www.ester.ee/record=b1558644*est