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Advancing drug–target interaction prediction: a comprehensive graph-based approach integrating knowledge graph embedding and ProtBert pretrainingDjeddi, Warith Eddine; Hermi, Khalil; Ben Yahia, Sadok; Diallo, GayoBMC Bioinformatics2023 / art. 488, 41 p.: ill https://doi.org/10.1186/s12859-023-05593-6 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Altered expression profile of igLON family of neural cell adhesion molecules in the dorsolateral prefrontal cortex of schizophrenic patientsKaris, Karina; Eskla, Kattri-Liis; Kaare, Maria; Täht, Karin; Tuusov, Jana; Visnapuu, Tanel; Innos, Jürgen; Timmusk, TõnisFrontiers in Molecular Neuroscience2018 / art. 8 https://doi.org/10.3389/fnmol.2018.00008 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rateMaser, Andres; Peebo, Karl; Vilu, Raivo; Nahku, RannoResearch in microbiology2020 / p. 185−193 https://doi.org/10.1016/j.resmic.2020.02.001 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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An electrochemical biosensor for direct detection of hepatitis C virusAntipchik, Mariia; Korzhikova-Vlakh, Evgenia; Polyakov, Dmitry; Tarasenko, Irina; Reut, Jekaterina; Öpik, Andres; Sõritski, VitaliAnalytical Biochemistry2021 / art. 114196 https://doi.org/10.1016/j.ab.2021.114196 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Antifungal agents in agriculture : friends and foes of public healthBrauer, Veronica Soares; Rezende, Caroline Patini; Pessoni, Andre Moreira; De Paula, Renato Graciano; Rangappa, Kanchugarakoppal S.; Nayaka, Siddaiah Chandra; Gupta, Vijai Kumar; Almeida, FaustoBiomolecules2019 / art. 521 https://doi.org/10.3390/biom9100521 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Apolipoprotein C-II : the re-emergence of a forgotten factorWolska, Anna; Reimund, Mart; Remaley, Alan T.Current opinion in lipidology2020 / p. 147-153 https://doi.org/10.1097/MOL.0000000000000680 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Apolipoprotein C-II mimetic peptide is an efficient activator of lipoprotein lipase in human plasma as studied by a calorimetric approachReimund, Mart; Wolska, Anna; Risti, Robert; Wilson, Sierra; Sviridov, Denis O.; Remaley, Alan T.; Lõokene, AivarBiochemical and biophysical research communications2019 / p. 67-72 https://doi.org/10.1016/j.bbrc.2019.08.130 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Seotud publikatsioonid 1

Calorimetry as a tool for mechanistic studies of lipolytic enzymes under in vivo like conditions = Kalorimeetria rakendamine lipolüütiliste ensüümide mehhanismide uurimiseks

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Author Correction : DOME : recommendations for supervised machine learning validation in biologyWalsh, Ian; Fishman, Dmytro; Garcia-Gasulla, Dario; Titma, Tiina; Pollastri, GianlucaNature methods2021 / p. 1409–1410 : ill https://doi.org/10.1038/s41592-021-01304-2 Journal metrics at Scopus Article at Scopus

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Seotud publikatsioonid 1

DOME : recommendations for supervised machine learning validation in biology

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Author Correction: SciPy 1.0 : fundamental algorithms for scientific computing in Python (Nature Methods, (2020), 17, 3, (261-272), 10.1038/s41592-019-0686-2)Virtanen, Pauli; Gommers, Ralf; Oliphant, Travis E.; Haberland, Matt; Reddy, Tyler; Cournapeau, David; Burovski, Evgeni; Peterson, Pearu; Weckesser, Warren; Bright, JonathanNature Methods2020 / p. 352 https://doi.org/10.1038/s41592-020-0772-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS

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Seotud publikatsioonid 1

SciPy 1.0 : fundamental algorithms for scientific computing in Python

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The biomolecular spectrum drives microbial biology and functions in agri-food-environmentsSharma, Minaxi; Singh, Dhananjaya Pratap; Rangappa, Kanchugarakoppal S.; Stadler, Marc; Mishra, Pradeep Kumar; Silva, Roberto Nascimento; Prasad, Ram; Gupta, Vijai KumarBiomolecules2020 / art. 401 https://doi.org/10.3390/biom10030401 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Calorimetric approach for comparison of Angiopoietin-like protein 4 with other pancreatic lipase inhibitorsVillo, Ly; Risti, Robert; Reimund, Mart; Kukk, Kaia; Samel, Nigulas; Lõokene, AivarBiochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids2020 / art. 158553, 12 p. : ill https://doi.org/10.1016/j.bbalip.2019.158553 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG

Seotud publikatsioonid 1

Calorimetry as a tool for mechanistic studies of lipolytic enzymes under in vivo like conditions = Kalorimeetria rakendamine lipolüütiliste ensüümide mehhanismide uurimiseks

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Candidate cancer driver mutations in distal regulatory elements and long-range chromatin interaction networksZhu, Helen; Uusküla-Reimand, Liis; Isaev, Keren; Wadi, Lina; Alizada, Azad; Shuai, Shimin; Huang, Vincent; Aduluso-Nwaobasi, Dike; Paczkowska, Marta; Abd-Rabbo, Diala; Ocsenas, Oliver; Liang, Minggao; Thompson, J. Drew; Li, Yao; Ruan, Luyao; Krassowski, Michal; Dzneladze, Irakli; Simpson, Jared T.; Lupien, Mathieu; Stein, Lincoln D.; Boutros, Paul C.; Wilson, Michael D.; Reimand, JüriMolecular Cell2020 / p. 1307-1321.e10 https://doi.org/10.1016/j.molcel.2019.12.027 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Cell type-specific labelling of newly synthesized proteins by puromycin inactivationCabrera-Cabrera, Florencia; Tull, Helena; Capuana, Roberta; Kasvandik, Sergo; Timmusk, Tõnis; Koppel, IndrekJournal of biological chemistry2023 / art. 105129 https://doi.org/10.1016/j.jbc.2023.105129 Journal metrics at Scopus Article at Scopus

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Cellular, extracellular and extracellular vesicular miRNA profiles of pre-ovulatory follicles indicate signaling disturbances in polycystic ovariesRooda, Ilmatar; Hasan, Mohammed Mehedi; Roos, Kristine; Viil, Janeli; Smolander, Olli-Pekka; Velthut-Meikas, AgneInternational journal of molecular sciences2020 / art. 9550, 23 p. : ill https://doi.org/10.3390/ijms21249550 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Seotud publikatsioonid 1

Complexity of human ovarian folliculogenesis : molecular markers of ovarian-based infertility and the impact of endocrine-disrupting chemicals = Inimese munasarja follikulogeneesi keerukus : munasarjapõhise viljatuse molekulaarsed markerid ja endokriinsüsteemi mõjutavate kemikaalide toime

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Chrysophanol : a natural anthraquinone with multifaceted biotherapeutic potentialPrakteeksha; Yusuf, Mohd Aslam; Singh, Brahma Nand; Sudheer, Surya; Gupta, Vijai KumarBiomolecules2019 / art. 68, 24 p. : ill https://doi.org/10.3390/biom9020068 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcodingNagai, Satoshi; Sildever, Sirje; Nishi, NorikoMetabarcoding and metagenomics2022 / art. e77704 https://doi.org/10.3897/mbmg.6.77704 Journal metrics at Scopus Article at Scopus

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A COST Action on microbial responses to low pH : developing links and sharing resources across the academic-industrial divideAzizi, Tamir; Carvalho De Araujo, Laurine; Cetecioglu, Zeynep; Clancy, Aisha J.; Feger, Marie L.; Liran, Oded; O’Byrne, Conor; Sanka, Immanuel; Scheler, Ott; Sedlakova-Kadukova, Jana; Ziv, Carmit; De Biase, Daniela; Lund, Peter A.New biotechnology2022 / p. 64-70 https://doi.org/10.1016/j.nbt.2022.09.002 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Cytosporone B as a biological preservative: purification, fungicidal activity and mechanism of action against geotrichum citri-aurantiiYin, Chunxiao; Liu, Hongxin; Shan, Yang; Gupta, Vijai Kumar; Jiang, Yueming; Zhang, Weimin; Tan, Haibo; Gong, LiangBiomolecules2019 / Art. nr. 125 https://doi.org/10.3390/biom9040125 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Determination of carcinoembryonic antigen as a tumor marker using a novel graphene-based label-free electrochemical immunosensorJozghorbani, Maryam; Fathi, Mojtaba; Kazemi, Sayed Habib; Alinejadian, NavidAnalytical biochemistry2021 / art. 114017 https://doi.org/10.1016/j.ab.2020.114017 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Differential susceptibility of catheter biomaterials to biofilm-associated infections and their remedy by drug-encapsulated eudragit RL100 nanoparticlesPandey, Vivek Kumar; Srivastava, Kumar Rohit; Ajmal, Gufran; Thakur, Vijay Kumar; Gupta, Vijai Kumar; Upadhyay, Siddh Nath; Mishra, Pradeep KumarInternational Journal of Molecular Sciences2019 / Art. nr. 5110 https://doi.org/10.3390/ijms20205110 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Distinct characteristics of the substrate binding between highly homologous catalase-related allene oxide synthase and hydroperoxide lyaseTeder, Tarvi; Samel, Nigulas; Lõhelaid, HelikeArchives of biochemistry and biophysics2019 / art. 108126, 10 p. : ill https://doi.org/10.1016/j.abb.2019.108126 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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DOME : recommendations for supervised machine learning validation in biologyWalsh, Ian; Fishman, Dmytro; Garcia-Gasulla, Dario; Titma, Tiina; Pollastri, Gianluca; Harrow, Jennifer; Psomopoulos, Fotis E.; Tosatto, Silvio C. E.Nature methods2021 / p. 1122–1127 https://doi.org/10.1038/s41592-021-01205-4 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Seotud publikatsioonid 1

Author Correction : DOME : recommendations for supervised machine learning validation in biology

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Dual ELISA using SARS-CoV-2 N protein produced in E. coli and CHO cells reveals epitope masking by N-glycosylationRump, Airi; Risti, Robert; Kristal, Mai-Ly; Reut, Jekaterina; Sõritski, Vitali; Lõokene, Aivar; Rüütel Boudinot, SirjeBiochemical and biophysical research communications2021 / p. 457−460 https://doi.org/10.1016/j.bbrc.2020.11.060 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Efficacy and epigenetic interactions of novel DNA hypomethylating agent guadecitabine (SGI-110) in preclinical models of hepatocellular carcinomaJueliger, Simone; Lyons, John; Cannito, Sara; Pata, Illar; Pata, Pille; Školnaja, MariannaEpigenetics2016 / p. 709-720 : ill https://doi.org/10.1080/15592294.2016.1214781 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Expression of alternative transcription factor 4 mRNAs and protein isoforms in the developing and adult rodent and human tissuesSirp, Alex; Shubina, Anastassia; Tuvikene, Jürgen; Tamberg, Laura; Kiir, Carl Sander; Kranich, Laura; Timmusk, TõnisFrontiers in Molecular Neuroscience2022 / art. 1033224 https://doi.org/10.3389/fnmol.2022.1033224 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG

Seotud publikatsioonid 2

Biokeemia, geneetika ja molekulaarbioloogia. Molekulaarbioloogia (category)

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subject term 2

author 2

TTÜ department 1