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Author Correction : DOME : recommendations for supervised machine learning validation in biologyWalsh, Ian; Fishman, Dmytro; Garcia-Gasulla, Dario; Titma, Tiina; Pollastri, GianlucaNature methods2021 / p. 1409–1410 : ill https://doi.org/10.1038/s41592-021-01304-2 Journal metrics at Scopus Article at Scopus

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Related publications 1

DOME : recommendations for supervised machine learning validation in biology

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Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns (Nature Communications, (2020), 11, 1, (728), 10.1038/s41467-019-13825-8)Jiao, Wei; Atwal, Gurnit; Polak, Paz; Karlic, Rosa; Cuppen, Edwin; Al-Shahrour, Fatima; Bailey, Peter J.; Biankin, Andrew V.; Boutros, Paul C.; Uusküla-Reimand, LiisNature Communications2022 / Art. 7573 https://doi.org/10.1038/s41467-022-32329-6 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author correction: A global database for metacommunity ecology, integrating species, traits, environment and space (Scientific Data, (2020), 7, 1, (6), 10.1038/s41597-019-0344-7)Jeliazkov, Alienor; Mijatovic, Darko; Chantepie, Stéphane; Andrew, Nigel; Arlettaz, Raphaël; Barbaro, Luc; Barsoum, Nadia; Bartonova, Alena; Reitalu, TriinScientific Data2020 / Art. 79 https://doi.org/10.1038/s41597-020-0420-z Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature, (2020), 578, 7793, (102-111), 10.1038/s41586-020-1965-x)Rheinbay, Esther; Nielsen, Morten Muhlig; Abascal, Federico; Wala, Jeremiah A.; Shapira, Ofer; Tiao, Grace; Hornshøj, Henrik; Hess, Julian M.; Juul, Randi Istrup; Lin, Ziao; Feuerbach, Lars; Sabarinathan, Radhakrishnan; Uusküla-Reimand, LiisNature2023 / p. E40 https://doi.org/10.1038/s41586-022-05599-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes (Nature Biotechnology, (2020), 38, 3, (288-292), 10.1038/s41587-019-0360-3)Yakneen, Sergei; Waszak, Sebastian M.; Aminou, Brice; Bartolome, Javier; Boroevich, Keith A.; Boyce, Rich; Brooks, Angela N.; Buchanan, Alex; Buchhalter, Ivo; Butler, Adam P.; Byrne, Niall J.; Cafferkey, Andy; Uusküla-Reimand, LiisAuthor Correction: Butler enables rapid cloud-based analysis of thousands of human genomes (Nature Biotechnology, (2020), 38, 3, (288-292), 10.1038/s41587-019-0360-3)2023 / p. 577 https://doi.org/10.1038/s41587-022-01554-1 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower (Nature Communications, (2020), 11, 1, (734), 10.1038/s41467-019-13929-1)Shuai, Shimin; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Bandopadhayay, Pratiti; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Uusküla-Reimand, LiisNature Communications2022 / art. 7571 https://doi.org/10.1038/s41467-022-32343-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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207

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Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing (Nature Genetics, (2020), 52, 3, (331-341), 10.1038/s41588-019-0576-7)Cortés-Ciriano, Isidro; Lee, Jake June-Koo; Xi, Ruibin; Jain, Dhawal; Jung, Youngsook Lucy; Yang, Lixing; Gordenin, Dmitry A.; Klimczak, Leszek J.; Zhang, Cheng-Zhong; Pellman, David S.; Akdemir, Kadir Caner; Alvarez, Eva Garcia; Uusküla-Reimand, LiisNature Genetics2023 / p. 1076 https://doi.org/10.1038/s41588-023-01315-z Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)Yuan, Yuan; Ju, Young Seok; Kim, Youngwook; Li, Jun; Wang, Yumeng; Yoon, Christopher J.; Yang, Yang; Martincorena, Inigo; Creighton, Chad J.; Weinstein, John N.; Xu, Yanxun; Han, Leng; Uusküla-Reimand, LiisNature Genetics2023 / p. 892 https://doi.org/10.1038/s41588-020-0629-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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209

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Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)Yuan, Yuan; Ju, Young Seok; Kim, Youngwook; Li, Jun; Wang, Yumeng; Yoon, Christopher J.; Yang, Yang; Martincorena, Inigo; Creighton, Chad J.; Weinstein, John N.; Xu, Yanxun; Han, Leng; Uusküla-Reimand, LiisNature Genetics2023 / p. 1078 https://doi.org/10.1038/s41588-023-01317-x Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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210

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Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer (Nature Genetics, (2020), 52, 3, (294-305), 10.1038/s41588-019-0564-y)Akdemir, Kadir Caner; Le, Victoria T.; Chandran, Sahaana; Li, Yilong; Verhaak, Roel G.W.; Beroukhim, Rameen; Campbell, Peter J.; Chin, Lynda; Dixon, Jesse R.; Futreal, Phillip Andrew; Akdemir, Kadir Caner; Alvarez, Eva Garcia; Uusküla-Reimand, LiisNature Genetics2023 / p. 1079 https://doi.org/10.1038/s41588-023-01318-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Divergent mutational processes distinguish hypoxic and normoxic tumours (Nature Communications, (2020), 11, 1, (737), 10.1038/s41467-019-14052-x)Bhandari, Vinayak; Li, Constance H.; Bristow, Robert G,; Boutros, Paul C.; Aaltonen, Lauri A.; Abascal, Federico; Abeshouse, Adam; Aburatani, Hiroyuki; Adams, David J.; Uusküla-Reimand, LiisNature Communications2022 / Art. nr. 7569 https://doi.org/10.1038/s41467-022-32339-4 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author correction: First crystal structure of an endo-levanase – the BT1760 from a human gut commensal Bacteroides thetaiotaomicron (Scientific Reports, (2019), 9, 1, (8443), 10.1038/s41598-019-44785-0)Ernits, Karin; Eek, Priit; Lukk, Tiit; Visnapuu, Triinu; Alamäe, TiinaScientific reports2019 / art. 17512, 1 p. https://doi.org/10.1038/s41598-019-54274-z Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Genomic basis for RNA alterations in cancer (Nature, (2020), 578, 7793, (129-136), 10.1038/s41586-020-1970-0)Calabrese, Claudia; Davidson, Natalie R.; Demircioğlu, Deniz; Fonseca, Nuno A.; He, Yao; Kahles, André; Lehmann, Kjong-Van; Liu, Fenglin; Shiraishi, Yuichi; Soulette, Cameron M.; Urban, Lara; Shiraishi, Yuichi; Uusküla-Reimand, LiisNature2023 / p. E37 https://doi.org/10.1038/s41586-022-05596-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer (Nature Communications, (2020), 11, 1, (733), 10.1038/s41467-019-13824-9)Sieverling, Lina; Hong, Chen; Koser, Sandra D.; Ginsbach, Philip; Kleinheinz, Kortine; Hutter, Barbara; Braun, Delia M.; Cortés-Ciriano, Isidro; Xi, Ruibin; Uusküla-Reimand, LiisNature Communications2022 / Art. nr. 7574 https://doi.org/10.1038/s41467-022-32328-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (Nature Communications, (2020), 11, 1, (736), 10.1038/s41467-019-13885-w)Zhang, Yiqun; Chen, Fengju; Fonseca, Nuno A.; He, Yao; Fujita, Masashi; Nakagawa, Hidewaki; Zhang, Zemin; Brazma, Alvis; Amin, Samirkumar B.; Uusküla-Reimand, LiisNature Communications2022 / Art. nr. 7572 https://doi.org/10.1038/s41467-022-32333-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Inferring structural variant cancer cell fraction (Nature Communications, (2020), 11, 1, (730), 10.1038/s41467-020-14351-8)Cmero, Marek; Yuan, Ke; Ong, Cheng Soon; Schröder, Jan; Adams, David J.; Anur, Pavana; Beroukhim, Rameen; Boutros, Paul C.; Bowtell, David D. L.; Uusküla-Reimand, LiisNature Communications2022 / Art. n.r 7568 https://doi.org/10.1038/s41467-022-32338-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Integrative pathway enrichment analysis of multivariate omics data (Nature Communications, (2020), 11, 1, (735), 10.1038/s41467-019-13983-9)Paczkowska, Marta; Barenboim, Jonathan; Sintupisut, Nardnisa; Fox, Natalie S.; Zhu, Helen; Abd-Rabbo, Diala; Mee, Miles W.; Boutros, Paul C.; Abascal, Federico; Uusküla-Reimand, LiisNature Communications2022 / art. 7570 https://doi.org/10.1038/s41467-022-32342-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition (Nature Genetics, (2020), 52, 3, (306-319), 10.1038/s41588-019-0562-0)Rodriguez-Martin, Bernardo; Alvarez, Eva Garcia; Baez-Ortega, Adrian; Zamora, Jorge; Supek, Fran; Demeulemeester, Jonas; Santamarina, Martin; Temes, Javier; Garcia-Souto, Daniel; Detering, Harald; Li, Yilong; Rodriguez-Castro, Jorge; Uusküla-Reimand, LiisNature Genetics2023 / p. 1080 https://doi.org/10.1038/s41588-023-01319-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Pan-cancer analysis of whole genomes (Nature, (2020), 578, 7793, (82-93), 10.1038/s41586-020-1969-6)Aaltonen, Lauri A.; Abascal, Federico; Abeshouse, Adam; Aburatani, Hiroyuki; Adams, David J.; Agrawal, Nishant; Ahn, Keun Soo; Ahn, Sung-Min; Aikata, Hiroshi; Akbani, Rehan; Akdemir, Kadir Caner; Al-Ahmadie, Hikmat; Uusküla-Reimand, LiisNature2023 / p. E39 https://doi.org/10.1038/s41586-022-05598-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes (Nature Communications, (2020), 11, 1, (729), 10.1038/s41467-020-14367-0)Reyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Uusküla-Reimand, LiisNature Communications2022 / Art. nr. 7566 https://doi.org/10.1038/s41467-022-32334-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Patterns of somatic structural variation in human cancer genomes (Nature, (2020), 578, 7793, (112-121), 10.1038/s41586-019-1913-9)Li, Yilong; Roberts, Nicola D.; Wala, Jeremiah A.; Shapira, Ofer; Schumacher, Steven E.; Kumar, Kiran; Khurana, Ekta; Waszak, Sebastian; Korbel, Jan O.; Haber, James E.; Imielinski, Marcin; Akdemir, Kadir Caner; Uusküla-Reimand, LiisNature2023 / p. E38 https://doi.org/10.1038/s41586-022-05597-x Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig (Nature Communications, (2020), 11, 1, (731), 10.1038/s41467-020-14352-7)Rubanova, Yulia; Shi, Ruian; Harrigan, Caitlin F.; Li, Roujia; Wintersinger, Jeff; Sahin, Nil; Deshwar, Amit G.; Dentro, Stefan C.; Leshchiner, Ignaty; Uusküla-Reimand, LiisNature Communications2022 / Art. nr. 7567 https://doi.org/10.1038/s41467-022-32336-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (Nature Communications, (2020), 11, 1, (4748), 10.1038/s41467-020-18151-y)Bailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Li, Yize; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 6232 https://doi.org/10.1038/s41467-020-20128-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction: SciPy 1.0 : fundamental algorithms for scientific computing in Python (Nature Methods, (2020), 17, 3, (261-272), 10.1038/s41592-019-0686-2)Virtanen, Pauli; Gommers, Ralf; Oliphant, Travis E.; Haberland, Matt; Reddy, Tyler; Cournapeau, David; Burovski, Evgeni; Peterson, Pearu; Weckesser, Warren; Bright, JonathanNature Methods2020 / p. 352 https://doi.org/10.1038/s41592-020-0772-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS

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SciPy 1.0 : fundamental algorithms for scientific computing in Python

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Author Correction: The evolutionary history of 2,658 cancers (Nature, (2020), 578, 7793, (122-128), 10.1038/s41586-019-1907-7)Gerstung, Moritz; Jolly, Clemency; Leshchiner, Ignaty; Dentro, Stefan C.; Gonzalez, Santiago; Rosebrock, Daniel; Mitchell, Thomas J.; Rubanova, Yulia; Anur, Pavana; Yu, Kaixian; Tarabichi, Maxime; Deshwar, Amit; Uusküla-Reimand, LiisNature2023 / p. E42 https://doi.org/10.1038/s41586-022-05601-4 Journal metrics at Scopus Article at Scopus

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