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26
journal article EST
/
journal article ENG
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
Carlevaro-Fita, Joan
;
Lanzós, Andrés
;
Feuerbach, Lars
;
Hong, Chen
;
Mas-Ponte, David
;
Pedersen, Jakob Skou
;
Abascal, Federico
;
Amin, Samirkumar B.
;
Johnson, Rory
;
Uusküla-Reimand, Liis
Communications Biology
2020
/
Art. nr. 56
https://doi.org/10.1038/s42003-019-0741-7
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journal article ENG
27
journal article EST
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journal article ENG
13C- and 15N-labeling of amyloid-β and inhibitory peptides to study their interaction via nanoscale infrared spectroscopy
Paul, Suman
;
Jeništová, Adéla
;
Vosough, Faraz
;
Berntsson, Elina
;
Mörman, Cecilia
;
Jarvet, Jüri
;
Gräslund, Astrid
;
Wärmländer, Sebastian K. T. S.
;
Barth, Andreas
Communications Chemistry
2023
/
art. 163
https://doi.org/10.1038/s42004-023-00955-w
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28
journal article EST
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journal article ENG
Combined burden and functional impact tests for cancer driver discovery using DriverPower
Shuai, Shimin
;
Abascal, Federico
;
Amin, Samirkumar B.
;
Bader, Gary D.
;
Bandopadhayay, Pratiti
;
Barenboim, Jonathan
;
Beroukhim, Rameen
;
Bertl, Johanna
;
Boroevich, Keith A.
;
Uusküla-Reimand, Liis
Nature Communications
2020
/
art. 734
https://doi.org/10.1038/s41467-019-13929-1
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29
journal article EST
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journal article ENG
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
Cortés-Ciriano, Isidro
;
Lee, Jake June-Koo
;
Xi, Ruibin
;
Jain, Dhawal
;
Jung, Youngsook Lucy
;
Yang, Lixing
;
Gordenin, Dmitry
;
Klimczak, Leszek J.
;
Uusküla-Reimand, Liis
Nature Genetics
2020
/
p. 331-341
https://doi.org/10.1038/s41588-019-0576-7
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journal article ENG
30
journal article EST
/
journal article ENG
Comprehensive molecular characterization of mitochondrial genomes in human cancers
Yuan, Yuan
;
Ju, Young Seok
;
Kim, Youngwook
;
Li, Jun
;
Wang, Yumeng
;
Yoon, Christopher J.
;
Yang, Yang
;
Martincorena, Inigo
;
Creighton, Chad J.
;
Uusküla-Reimand, Liis
Nature Genetics
2020
/
p. 342 - 352
https://doi.org/10.1038/s41588-019-0557-x
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31
journal article EST
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journal article ENG
Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer
Akdemir, Kadir Caner
;
Le, Victoria T.
;
Chandran, Sahaana
;
Li, Yilong
;
Verhaak, Roel G.W.
;
Beroukhim, Rameen
;
Campbell, Peter J.
;
Chin, Lynda
;
Dixon, Jesse R.
;
Futreal, Phillip Andrew
;
Uusküla-Reimand, Liis
Nature Genetics
2020
/
p. 294 - 305
https://doi.org/10.1038/s41588-019-0564-y
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32
journal article EST
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journal article ENG
Functional vegetation change over millennia
Reitalu, Triin
;
Nogué, Sandra
Nature Ecology and Evolution
2023
/
p. 174 - 175
https://doi.org/10.1038/s41559-022-01949-y
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journal article ENG
33
journal article EST
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journal article ENG
High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations
Zhang, Yiqun
;
Chen, Fengju
;
Fonseca, Nuno A.
;
He, Yao
;
Fujita, Masashi
;
Nakagawa, Hidewaki
;
Zhang, Zemin
;
Brazma, Alvis
;
Amin, Samirkumar B.
;
Uusküla-Reimand, Liis
Nature Communications
2020
/
Art. nr. 736
https://doi.org/10.1038/s41467-019-13885-w
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34
journal article
High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription
Bressin, A.
;
Jasnovidova, Olga
;
Arnold, M.
;
Altendorfer, E.
;
Trajkovski, F.
;
Kratz, T. A.
;
Handzlik, J. E.
;
Hnisz, D.
Nature communications
2023
/
art. 4971
https://doi.org/10.1038/s41467-023-40633-y
journal article
35
journal article
Impact of blocking layers based on TiO2 and ZnO prepared via direct current reactive magnetron sputtering on DSSC solar cells
Sibinski, Maciej
;
Sawicka-Chudy, Paulina
;
Wisz, Grzegorz
;
Gnida, Pawel
;
Schab-Balcerzak, Ewa
;
Wal, Andrzej
;
Yavorskyi, Rostyslav
;
Cholewa, Marian
Scientific reports
2024
/
art. 10676
https://doi.org/10.1038/s41598-024-61512-6
journal article
36
journal article EST
/
journal article ENG
Inferring structural variant cancer cell fraction
Cmero, Marek
;
Yuan, Ke
;
Ong, Cheng Soon
;
Schröder, Jan
;
Adams, David J.
;
Anur, Pavana
;
Beroukhim, Rameen
;
Boutros, Paul C.
;
Bowtell, David D. L.
;
Uusküla-Reimand, Liis
Nature Communications
2020
/
Art. nr. 730
https://doi.org/10.1038/s41467-020-14351-8
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37
journal article EST
/
journal article ENG
Integrative pathway enrichment analysis of multivariate omics data
Paczkowska, Marta
;
Barenboim, Jonathan
;
Sintupisut, Nardnisa
;
Fox, Natalie S.
;
Zhu, Helen
;
Abd-Rabbo, Diala
;
Mee, Miles W.
;
Boutros, Paul C.
;
Abascal, Federico
;
Uusküla-Reimand, Liis
Nature Communications
2020
/
Art. nr. 735
https://doi.org/10.1038/s41467-019-13983-9
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38
journal article EST
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journal article ENG
The landscape of viral associations in human cancers
Zapatka, Marc
;
Borozan, Ivan
;
Brewer, Daniel S.
;
Iskar, Murat
;
Grundhoff, Adam
;
Alawi, Malik
;
Desai, Nikita
;
Sültmann, Holger
;
Moch, Holger
;
Cooper, Colin S.
;
Uusküla-Reimand, Liis
Nature Genetics
2020
/
p. 320 - 330
https://doi.org/10.1038/s41588-019-0558-9
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39
journal article EST
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journal article ENG
Publisher Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)
Yuan, Yuan
;
Ju, Young Seok
;
Kim, Youngwook
;
Li, Jun
;
Wang, Yumeng
;
Yoon, Christopher J.
;
Yang, Yang
;
Martincorena, Inigo
;
Uusküla-Reimand, Liis
Nature Genetics
2023
/
p. 893
https://doi.org/10.1038/s41588-020-0587-4
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40
journal article EST
/
journal article ENG
Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig
Rubanova, Yulia
;
Shi, Ruian
;
Harrigan, Caitlin F.
;
Li, Roujia
;
Wintersinger, Jeff
;
Sahin, Nil
;
Deshwar, Amit G.
;
Dentro, Stefan C.
;
Leshchiner, Ignaty
;
Uusküla-Reimand, Liis
Nature Communications
2020
/
Art. nr. 731
https://doi.org/10.1038/s41467-020-14352-7
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41
journal article EST
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journal article ENG
Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references
Pool, Allan-Hermann
;
Poldsam, Helen
;
Chen, Sisi
;
Thomson, Matt
;
Oka, Yuki
Nature Methods
2023
/
p. 1506 - 1515
https://doi.org/10.1038/s41592-023-02003-w
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42
journal article EST
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journal article ENG
Residue-specific binding of Ni(II) ions influences the structure and aggregation of amyloid beta (Aβ) peptides
Berntsson, Elina
;
Vosough, Faraz
;
Svantesson, Teodor
;
Pansieri, Jonathan
;
Iashchishyn, Igor A.
;
Ostojić, Lucija
;
Dong, Xiaolin
;
Paul, Suman
;
Jarvet, Jüri
;
Roos, Per M.
;
Gräslund, Astrid
;
Wärmländer, Sebastian K.T.S.
Scientific Reports
2023
/
art. 3341
https://doi.org/10.1038/s41598-023-29901-5
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journal article ENG
43
journal article EST
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journal article ENG
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
Bailey, Matthew H.
;
Meyerson, William U.
;
Dursi, Lewis Jonathan
;
Wang, Liang-Bo
;
Dong, Guanlan
;
Liang, Wen-Wei
;
Weerasinghe, Amila
;
Li, Shantao
;
Kelso, Sean
;
Vijay Raghavan, Krishnaswamy
Nature Communications
2020
/
Art. nr. 4748
https://doi.org/10.1038/s41467-020-18151-y
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journal article ENG
44
journal article EST
/
journal article ENG
Sex differences in oncogenic mutational processes
Li, Constance H.
;
Prokopec, Stephenie D.
;
Sun, Ren X.
;
Yousif, Fouad
;
Schmitz, Nathaniel
;
Al-Shahrour, Fatima
;
Atwal, Gurnit
;
Bailey, Peter J.
;
Biankin, Andrew V.
;
Uusküla-Reimand, Liis
Nature Communications
2020
/
Art. nr. 4330
https://doi.org/10.1038/s41467-020-17359-2
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journal article ENG
45
journal article EST
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journal article ENG
Synergistic antibacterial effect of copper and silver nanoparticles and their mechanism of action
Vasiliev, Grigory
;
Kubo, Anna-Liisa
;
Vija, Heiki
;
Kahru, Anne
;
Bondar, Denys
;
Karpichev, Yevgen
;
Bondarenko, Olesja
Scientific reports
2023
/
art. 9202, 15 p. : ill
https://doi.org/10.1038/s41598-023-36460-2
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Seotud publikatsioonid
1
Synergistic mechanisms and toxicity profiles of silver and copper nanoparticles for the development of novel antimicrobial materials = Vase ja hõbeda nanoosakeste sünergilise koosmõju mehhanismid ja rakendamine uute antimikroobsete materjalide arendamiseks
46
journal article
Transfer of modified gut viromes improves symptoms associated with metabolic syndrome in obese male mice
Mao, Xiaotian
;
Larsen, Sabina Birgitte
;
Zachariassen, Line Sidsel Fisker
;
Brunse, Anders
;
Adamberg, Signe
;
Mejia, Josue Leonardo Castro
;
Larsen, Frej
;
Adamberg, Kaarel
;
Nielsen, Dennis Sandris
;
Hansen, Axel Kornerup
;
Hansen, Camilla Hartmann Friis
;
Rasmussen, Torben Sølbeck
Nature communications
2024
/
art. 4704
https://doi.org/10.1038/s41467-024-49152-w
journal article
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