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book article

Cellular localization of cocksfoot mottle sobemovirus (CfMV) proteinsTruve, Erkki; Meier, Merike; Paves, Heiti; Olspert, Allan; Toomela, Raavo; Tamm, T.XIIth International Congress of Virology2002 / p. 303

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Characterization of the complete genome of oat sterile dwarf virus : a fijivirus occurring in the temperate climate zone of EuropeOja, Tatjana; Soooväli, Pille; Sõmera, MerikeArchives of virology2023 / art. 259 https://doi.org/10.1007/s00705-023-05890-8 Journal metrics at Scopus Article at Scopus

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dissertation

Cocksfoot mottle virus : the genome organisation and translational strategiesTamm, Tiina2000 http://www.ester.ee/record=b1060777*est

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Combined burden and functional impact tests for cancer driver discovery using DriverPowerShuai, Shimin; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Bandopadhayay, Pratiti; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Uusküla-Reimand, LiisNature Communications2020 / art. 734 https://doi.org/10.1038/s41467-019-13929-1 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Comparative genomic analysis of monosporidial and monoteliosporic cultures for unraveling the complexity of molecular pathogenesis of Tilletia indica pathogen of wheatMishra, Pallavi; Maurya, Ranjeet; Gupta, Vijai Kumar; Ramteke, Pramod Wasudeo; Marla, Soma S.; Kumar, AnilScientific reports2019 / art. 8185, 15 p. : ill https://doi.org/10.1038/s41598-019-44464-0 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Complete genome sequencing of the luminescent bacterium, vibrio qinghaiensis sp. Q67 using PacBio technologyGong, Liang; Wu, Yu; Jian, Qijie; Yin, Chunxiao; Gupta, Vijai Kumar; Duan, Xuewu; Jiang, YuemingScientific Data2018 / art. 170205 https://doi.org/10.1038/sdata.2017.205 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencingCortés-Ciriano, Isidro; Lee, Jake June-Koo; Xi, Ruibin; Jain, Dhawal; Jung, Youngsook Lucy; Yang, Lixing; Gordenin, Dmitry; Klimczak, Leszek J.; Uusküla-Reimand, LiisNature Genetics2020 / p. 331-341 https://doi.org/10.1038/s41588-019-0576-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Comprehensive molecular characterization of mitochondrial genomes in human cancersYuan, Yuan; Ju, Young Seok; Kim, Youngwook; Li, Jun; Wang, Yumeng; Yoon, Christopher J.; Yang, Yang; Martincorena, Inigo; Creighton, Chad J.; Uusküla-Reimand, LiisNature Genetics2020 / p. 342 - 352 https://doi.org/10.1038/s41588-019-0557-x Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Correction: Genome-wide meta-analysis identifies novel loci conferring risk of acne vulgaris (European Journal of Human Genetics, (2023), 10.1038/s41431-023-01326-8)Teder-Laving, Maris; Kals, Mart; Reigo, Anu; Ehin, Riin; Objärtel, Telver; Vaht, Mariliis; Nikopensius, Tiit; Metspalu, Andres; Kingo, KülliEuropean Journal of Human Genetics2023 https://doi.org/10.1038/s41431-023-01366-0 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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CRISPR/Cas-mediated plant genome editing : outstanding challenges a decade after implementationCardi, Teodoro; Murovec, Jana; Bakhsh, Allah; Boniecka, Justyna; Bruegmann, Tobias; Bull, Simon E.; Eeckhaut, Tom; Fladung, Matthias; Galovic, Vladislava; Linkiewicz, Anna; Lukan, Tjaša; Mafra, Isabel; Michalski, Krzysztof; Kavas, Musa; Nicolia, Alessandro; Nowakowska, Justyna; Sagi, Laszlo; Sarmiento Guerin, Maria Cecilia; Yıldırım, Kubilay; Zlatkovic, Milica; Hensel, Goetz; Van Laere, KatrijnTrends in plant science2023 / p. 1144-1165 https://doi.org/10.1016/j.tplants.2023.05.012 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Disruption of chromatin folding domains by somatic genomic rearrangements in human cancerAkdemir, Kadir Caner; Le, Victoria T.; Chandran, Sahaana; Li, Yilong; Verhaak, Roel G.W.; Beroukhim, Rameen; Campbell, Peter J.; Chin, Lynda; Dixon, Jesse R.; Futreal, Phillip Andrew; Uusküla-Reimand, LiisNature Genetics2020 / p. 294 - 305 https://doi.org/10.1038/s41588-019-0564-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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journal article

Draft genome sequence of a new pseudomonas sp. strain, ef1, associated with the psychrophilic Antarctic Ciliate Euplotes focardiiRamasamy, Kesava Priyan; Telatin, Andrea; Mozzicafreddo, Matteo; Miceli, Cristina; Pucciarelli, SandraMicrobiology resource announcements2019 / art. e00867-19, 2 p http://dx.doi.org/10.1128/MRA.00867-19

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gapFinisher : a reliable gap filling pipeline for SSPACE-LongRead scaffolder outputKammonen, Juhana I.; Smolander, Olli-Pekka; Paulin, LarsPLoS ONE2019 / art. e0216885, 21 p. : ill https://doi.org/10.1371/journal.pone.0216885 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney functionPattaro, Cristian; Teumer, Alexander; Gorski, Mathias; Chu, Audrey Y.; Li, Man; Mijatovic, Vladan; Garnaas, Maija; Tin, Adrienne; Sorice, Rossella; Li, Yong; Viigimaa, MargusNature Communications2016 / art. 10023 https://doi.org/10.1038/ncomms10023 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungiMäkinen, Mari; Kuuskeri, Jaana; Laine, Pia; Smolander, Olli-PekkaBMC genomics2019 / art. 430, 22 p. : ill https://doi.org/10.1186/s12864-019-5817-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Genome-wide meta-analysis identifies novel loci conferring risk of acne vulgarisTeder-Laving, Maris; Kals, Mart; Reigo, Anu; Ehin, Riin; Objärtel, Telver; Vaht, Mariliis; Nikopensius, Tiit; Metspalu, Andres; Kingo, KülliEuropean Journal of Human Genetics2023 https://doi.org/10.1038/s41431-023-01326-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Genomic alterations as independent prognostic factors to predict the type of lung cancer recurrenceValter, A.; Luhari, Laura; Pisarev, Heti; Truumees, Birgit; Planken, A.; Smolander, Olli-Pekka; Oselin, K.Gene2023 / art. 147690, 8 p. : ill https://doi.org/10.1016/j.gene.2023.147690 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Genomic footprints of activated telomere maintenance mechanisms in cancerSieverling, Lina; Hong, Chen; Koser, Sandra D.; Ginsbach, Philip; Kleinheinz, Kortine; Hutter, Barbara; Braun, Delia M.; Cortés-Ciriano, Isidro; Xi, Ruibin; Uusküla-Reimand, LiisNature Communications2020 / art. 733, 13 p. ill https://doi.org/10.1038/s41467-019-13824-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterationsZhang, Yiqun; Chen, Fengju; Fonseca, Nuno A.; He, Yao; Fujita, Masashi; Nakagawa, Hidewaki; Zhang, Zemin; Brazma, Alvis; Amin, Samirkumar B.; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 736 https://doi.org/10.1038/s41467-019-13885-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Histone variant macroH2A1.1 Enhances nonhomologous end joining-dependent DNA double-strand-break repair and reprogramming efficiency of human iPSCsGiallongo, Sebastiano; Řeháková, Daniela; Biagini, Tommaso; Lo Re, Oriana; Raina, Priyanka; Lochmanová, Gabriela; Zdráhal, Zbyněk; Resnick, Igor; Pata, Pille; Pata, Illar; Mistrík, Martin; De Magalhães, João Pedro; Mazza, Tommaso; Koutná, Irena; Vinciguerra, ManlioStem Cells2022 / p. 35 - 48 https://doi.org/10.1093/stmcls/sxab004 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Identification and analysis of mtDNA genomes attributed to Finns reveal long-stagnant demographic trends obscured in the total diversityÖversti, Sanni; Onkamo, Päivi; Stoljarova, Monika; Budowle, Bruce; Sajantila, Antti; Palo, Jukka U.Scientific reports2017 / art. 6193, 10 p. : ill https://doi.org/10.1038/s41598-017-05673-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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journal article

Identification of the genome-linked protein in virions of Potato virus A, with comparison to other members in genus PotyvirusOruetxebarria, I.; Guo, D.; Merits, Andres; Mäkinen, K.; Saarma, Mart; Valkonen, J.P.Virus research2001 / p. 103-112 https://www.sciencedirect.com/science/article/abs/pii/S0168170200002161

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journal article

Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage mapBlande, Daniel; Smolander, Olli-Pekka; Ahola, VirpibioRxiv2020 / 32 p https://doi.org/10.1101/2020.11.03.364950

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Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage mapSmolander, Olli-Pekka; Blande, Daniel; Ahola, Virpi; Rastas, Pasi; Tanskanen, Jaakko; Kammonen, Juhana I.; Oostra, Vicencio; Pellegrini, Lorenzo; Ikonen, Suvi; Dallas, TadGigaScience2022 / art. giab097 https://doi.org/10.1093/gigascience/giab097 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Improving abiotic stress tolerance of forage grasses - prospects of using genome editingSustek-Sanchez, Ferenz; Rognli, Odd Arne; Rostoks, Nils; Sõmera, Merike; Jaškune, Kristina; Kovi, Mallikarjuna Rao; Statkevičiute, Gražina; Sarmiento Guerin, Maria CeciliaFrontiers in plant science2023 / art. 1127532 https://doi.org/10.3389/fpls.2023.1127532 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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