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26

journal article EST / journal article ENG

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesisCarlevaro-Fita, Joan; Lanzós, Andrés; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Abascal, Federico; Amin, Samirkumar B.; Johnson, Rory; Uusküla-Reimand, LiisCommunications Biology2020 / Art. nr. 56 https://doi.org/10.1038/s42003-019-0741-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
27

journal article EST / journal article ENG

13C- and 15N-labeling of amyloid-β and inhibitory peptides to study their interaction via nanoscale infrared spectroscopy
Paul, Suman; Jeništová, Adéla; Vosough, Faraz; Berntsson, Elina; Mörman, Cecilia; Jarvet, Jüri; Gräslund, Astrid; Wärmländer, Sebastian K. T. S.; Barth, AndreasCommunications Chemistry2023 / art. 163 https://doi.org/10.1038/s42004-023-00955-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
28

journal article EST / journal article ENG

Combined burden and functional impact tests for cancer driver discovery using DriverPowerShuai, Shimin; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Bandopadhayay, Pratiti; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Uusküla-Reimand, LiisNature Communications2020 / art. 734 https://doi.org/10.1038/s41467-019-13929-1 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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29

journal article EST / journal article ENG

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencingCortés-Ciriano, Isidro; Lee, Jake June-Koo; Xi, Ruibin; Jain, Dhawal; Jung, Youngsook Lucy; Yang, Lixing; Gordenin, Dmitry; Klimczak, Leszek J.; Uusküla-Reimand, LiisNature Genetics2020 / p. 331-341 https://doi.org/10.1038/s41588-019-0576-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
30

journal article EST / journal article ENG

Comprehensive molecular characterization of mitochondrial genomes in human cancersYuan, Yuan; Ju, Young Seok; Kim, Youngwook; Li, Jun; Wang, Yumeng; Yoon, Christopher J.; Yang, Yang; Martincorena, Inigo; Creighton, Chad J.; Uusküla-Reimand, LiisNature Genetics2020 / p. 342 - 352 https://doi.org/10.1038/s41588-019-0557-x Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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31

journal article EST / journal article ENG

Disruption of chromatin folding domains by somatic genomic rearrangements in human cancerAkdemir, Kadir Caner; Le, Victoria T.; Chandran, Sahaana; Li, Yilong; Verhaak, Roel G.W.; Beroukhim, Rameen; Campbell, Peter J.; Chin, Lynda; Dixon, Jesse R.; Futreal, Phillip Andrew; Uusküla-Reimand, LiisNature Genetics2020 / p. 294 - 305 https://doi.org/10.1038/s41588-019-0564-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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32

journal article EST / journal article ENG

Functional vegetation change over millenniaReitalu, Triin; Nogué, SandraNature Ecology and Evolution2023 / p. 174 - 175 https://doi.org/10.1038/s41559-022-01949-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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33

journal article EST / journal article ENG

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterationsZhang, Yiqun; Chen, Fengju; Fonseca, Nuno A.; He, Yao; Fujita, Masashi; Nakagawa, Hidewaki; Zhang, Zemin; Brazma, Alvis; Amin, Samirkumar B.; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 736 https://doi.org/10.1038/s41467-019-13885-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
34

journal article

High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcriptionBressin, A.; Jasnovidova, Olga; Arnold, M.; Altendorfer, E.; Trajkovski, F.; Kratz, T. A.; Handzlik, J. E.; Hnisz, D.Nature communications2023 / art. 4971 https://doi.org/10.1038/s41467-023-40633-y

journal article
35

journal article EST / journal article ENG

Inferring structural variant cancer cell fractionCmero, Marek; Yuan, Ke; Ong, Cheng Soon; Schröder, Jan; Adams, David J.; Anur, Pavana; Beroukhim, Rameen; Boutros, Paul C.; Bowtell, David D. L.; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 730 https://doi.org/10.1038/s41467-020-14351-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Aricle at WOS

journal article EST / journal article ENG
36

journal article EST / journal article ENG

Integrative pathway enrichment analysis of multivariate omics dataPaczkowska, Marta; Barenboim, Jonathan; Sintupisut, Nardnisa; Fox, Natalie S.; Zhu, Helen; Abd-Rabbo, Diala; Mee, Miles W.; Boutros, Paul C.; Abascal, Federico; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 735 https://doi.org/10.1038/s41467-019-13983-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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37

journal article EST / journal article ENG

The landscape of viral associations in human cancersZapatka, Marc; Borozan, Ivan; Brewer, Daniel S.; Iskar, Murat; Grundhoff, Adam; Alawi, Malik; Desai, Nikita; Sültmann, Holger; Moch, Holger; Cooper, Colin S.; Uusküla-Reimand, LiisNature Genetics2020 / p. 320 - 330 https://doi.org/10.1038/s41588-019-0558-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
38

journal article EST / journal article ENG

Latitudinal gradients in the phylogenetic assembly of angiosperms in Asia during the HoloceneBhatta, Kuber P.; Mottl, Ondřej; Felde, Vivian A.; Grytnes, John-Arvid; Reitalu, Triin; Birks, Hilary H.; Birks, H. John B.; Vetaas, Ole R.Scientific reports2024 / art. 17940, 16 p. : ill https://doi.org/10.1038/s41598-024-67650-1 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
39

journal article EST / journal article ENG

Publisher Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)Yuan, Yuan; Ju, Young Seok; Kim, Youngwook; Li, Jun; Wang, Yumeng; Yoon, Christopher J.; Yang, Yang; Martincorena, Inigo; Uusküla-Reimand, LiisNature Genetics2023 / p. 893 https://doi.org/10.1038/s41588-020-0587-4 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
40

journal article EST / journal article ENG

Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSigRubanova, Yulia; Shi, Ruian; Harrigan, Caitlin F.; Li, Roujia; Wintersinger, Jeff; Sahin, Nil; Deshwar, Amit G.; Dentro, Stefan C.; Leshchiner, Ignaty; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 731 https://doi.org/10.1038/s41467-020-14352-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
41

journal article EST / journal article ENG

Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic referencesPool, Allan-Hermann; Poldsam, Helen; Chen, Sisi; Thomson, Matt; Oka, YukiNature Methods2023 / p. 1506 - 1515 https://doi.org/10.1038/s41592-023-02003-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
42

journal article EST / journal article ENG

Residue-specific binding of Ni(II) ions influences the structure and aggregation of amyloid beta (Aβ) peptidesBerntsson, Elina; Vosough, Faraz; Svantesson, Teodor; Pansieri, Jonathan; Iashchishyn, Igor A.; Ostojić, Lucija; Dong, Xiaolin; Paul, Suman; Jarvet, Jüri; Roos, Per M.; Gräslund, Astrid; Wärmländer, Sebastian K.T.S.Scientific Reports2023 / art. 3341 https://doi.org/10.1038/s41598-023-29901-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
43

journal article EST / journal article ENG

Rethinking fish-friendliness of pumps by shifting focus to both safe and timely fish passage for effective conservationEvans, Oliver J.; Norman, Josh; Carter, Liam J.; Hutchinson, T.; Don, A.; Wright, Rosalind M.; Tuhtan, Jeffrey Andrew; Toming, Gert; Bolland, Jonathan D.Scientific reports2024 / art. 17888, 12 p. : ill https://doi.org/10.1038/s41598-024-67870-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
44

journal article EST / journal article ENG

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samplesBailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Kelso, Sean; Vijay Raghavan, KrishnaswamyNature Communications2020 / Art. nr. 4748 https://doi.org/10.1038/s41467-020-18151-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
45

journal article EST / journal article ENG

Sex differences in oncogenic mutational processesLi, Constance H.; Prokopec, Stephenie D.; Sun, Ren X.; Yousif, Fouad; Schmitz, Nathaniel; Al-Shahrour, Fatima; Atwal, Gurnit; Bailey, Peter J.; Biankin, Andrew V.; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 4330 https://doi.org/10.1038/s41467-020-17359-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
46

journal article EST / journal article ENG

Squeezing formaldehyde into C60 fullereneVyas, Vijyesh K.; Bacanu, George R.; Soundararajan, Murari; Marsden, Elizabeth S.; Jafari, Tanzeeha; Shugai, Anna; Light, Mark E.; Nagel, Urmas; Rõõm, Toomas; Levitt, Malcolm H.; Whitby, Richard J.Nature Communications2024 / art. 2515 https://doi.org/10.1038/s41467-024-46886-5 Journal metrics at Scopus Article at Scopus metrics at WOS at WOS

journal article EST / journal article ENG
47

journal article EST / journal article ENG

Synergistic antibacterial effect of copper and silver nanoparticles and their mechanism of actionVasiliev, Grigory; Kubo, Anna-Liisa; Vija, Heiki; Kahru, Anne; Bondar, Denys; Karpichev, Yevgen; Bondarenko, OlesjaScientific reports2023 / art. 9202, 15 p. : ill https://doi.org/10.1038/s41598-023-36460-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
Seotud publikatsioonid 1
- Synergistic mechanisms and toxicity profiles of silver and copper nanoparticles for the development of novel antimicrobial materials = Vase ja hõbeda nanoosakeste sünergilise koosmõju mehhanismid ja rakendamine uute antimikroobsete materjalide arendamiseks
48

journal article

Transfer of modified gut viromes improves symptoms associated with metabolic syndrome in obese male miceMao, Xiaotian; Larsen, Sabina Birgitte; Zachariassen, Line Sidsel Fisker; Brunse, Anders; Adamberg, Signe; Mejia, Josue Leonardo Castro; Larsen, Frej; Adamberg, Kaarel; Nielsen, Dennis Sandris; Hansen, Axel Kornerup; Hansen, Camilla Hartmann Friis; Rasmussen, Torben SølbeckNature communications2024 / art. 4704 https://doi.org/10.1038/s41467-024-49152-w

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