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26

journal article EST / journal article ENG

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesisCarlevaro-Fita, Joan; Lanzós, Andrés; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Abascal, Federico; Amin, Samirkumar B.; Johnson, Rory; Uusküla-Reimand, LiisCommunications Biology2020 / Art. nr. 56 https://doi.org/10.1038/s42003-019-0741-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
27

journal article EST / journal article ENG

13C- and 15N-labeling of amyloid-β and inhibitory peptides to study their interaction via nanoscale infrared spectroscopy
Paul, Suman; Jeništová, Adéla; Vosough, Faraz; Berntsson, Elina; Mörman, Cecilia; Jarvet, Jüri; Gräslund, Astrid; Wärmländer, Sebastian K.T.S.; Barth, AndreasCommunications Chemistry2023 / art. 163 https://doi.org/10.1038/s42004-023-00955-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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28

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Combined burden and functional impact tests for cancer driver discovery using DriverPowerShuai, Shimin; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Bandopadhayay, Pratiti; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Uusküla-Reimand, LiisNature Communications2020 / art. 734 https://doi.org/10.1038/s41467-019-13929-1 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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29

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Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencingCortés-Ciriano, Isidro; Lee, Jake June-Koo; Xi, Ruibin; Jain, Dhawal; Jung, Youngsook Lucy; Yang, Lixing; Gordenin, Dmitry; Klimczak, Leszek J.; Uusküla-Reimand, LiisNature Genetics2020 / p. 331-341 https://doi.org/10.1038/s41588-019-0576-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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30

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Comprehensive molecular characterization of mitochondrial genomes in human cancersYuan, Yuan; Ju, Young Seok; Kim, Youngwook; Li, Jun; Wang, Yumeng; Yoon, Christopher J.; Yang, Yang; Martincorena, Inigo; Creighton, Chad J.; Uusküla-Reimand, LiisNature Genetics2020 / p. 342 - 352 https://doi.org/10.1038/s41588-019-0557-x Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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31

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Disruption of chromatin folding domains by somatic genomic rearrangements in human cancerAkdemir, Kadir Caner; Le, Victoria T.; Chandran, Sahaana; Li, Yilong; Verhaak, Roel G.W.; Beroukhim, Rameen; Campbell, Peter J.; Chin, Lynda; Dixon, Jesse R.; Futreal, Phillip Andrew; Uusküla-Reimand, LiisNature Genetics2020 / p. 294 - 305 https://doi.org/10.1038/s41588-019-0564-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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32

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Functional vegetation change over millenniaReitalu, Triin; Nogué, SandraNature Ecology and Evolution2023 / p. 174 - 175 https://doi.org/10.1038/s41559-022-01949-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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33

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High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterationsZhang, Yiqun; Chen, Fengju; Fonseca, Nuno A.; He, Yao; Fujita, Masashi; Nakagawa, Hidewaki; Zhang, Zemin; Brazma, Alvis; Amin, Samirkumar B.; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 736 https://doi.org/10.1038/s41467-019-13885-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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34

journal article

High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcriptionBressin, A.; Jasnovidova, Olga; Arnold, M.; Altendorfer, E.; Trajkovski, F.; Kratz, T. A.; Handzlik, J. E.; Hnisz, D.Nature communications2023 / art. 4971 https://doi.org/10.1038/s41467-023-40633-y

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35

journal article EST / journal article ENG

Inferring structural variant cancer cell fractionCmero, Marek; Yuan, Ke; Ong, Cheng Soon; Schröder, Jan; Adams, David J.; Anur, Pavana; Beroukhim, Rameen; Boutros, Paul C.; Bowtell, David D. L.; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 730 https://doi.org/10.1038/s41467-020-14351-8 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Aricle at WOS

journal article EST / journal article ENG
36

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Integrative pathway enrichment analysis of multivariate omics dataPaczkowska, Marta; Barenboim, Jonathan; Sintupisut, Nardnisa; Fox, Natalie S.; Zhu, Helen; Abd-Rabbo, Diala; Mee, Miles W.; Boutros, Paul C.; Abascal, Federico; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 735 https://doi.org/10.1038/s41467-019-13983-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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37

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The landscape of viral associations in human cancersZapatka, Marc; Borozan, Ivan; Brewer, Daniel S.; Iskar, Murat; Grundhoff, Adam; Alawi, Malik; Desai, Nikita; Sültmann, Holger; Moch, Holger; Cooper, Colin S.; Uusküla-Reimand, LiisNature Genetics2020 / p. 320 - 330 https://doi.org/10.1038/s41588-019-0558-9 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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38

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Latitudinal gradients in the phylogenetic assembly of angiosperms in Asia during the HoloceneBhatta, Kuber P.; Mottl, Ondřej; Felde, Vivian A.; Grytnes, John-Arvid; Reitalu, Triin; Birks, Hilary H.; Birks, H. John B.; Vetaas, Ole R.Scientific reports2024 / art. 17940, 16 p. : ill https://doi.org/10.1038/s41598-024-67650-1 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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39

journal article EST / journal article ENG

Publisher Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers (Nature Genetics, (2020), 52, 3, (342-352), 10.1038/s41588-019-0557-x)Yuan, Yuan; Ju, Young Seok; Kim, Youngwook; Li, Jun; Wang, Yumeng; Yoon, Christopher J.; Yang, Yang; Martincorena, Inigo; Uusküla-Reimand, LiisNature Genetics2023 / p. 893 https://doi.org/10.1038/s41588-020-0587-4 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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40

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Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSigRubanova, Yulia; Shi, Ruian; Harrigan, Caitlin F.; Li, Roujia; Wintersinger, Jeff; Sahin, Nil; Deshwar, Amit G.; Dentro, Stefan C.; Leshchiner, Ignaty; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 731 https://doi.org/10.1038/s41467-020-14352-7 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
41

journal article EST / journal article ENG

Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic referencesPool, Allan-Hermann; Poldsam, Helen; Chen, Sisi; Thomson, Matt; Oka, YukiNature Methods2023 / p. 1506 - 1515 https://doi.org/10.1038/s41592-023-02003-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
42

journal article EST / journal article ENG

Residue-specific binding of Ni(II) ions influences the structure and aggregation of amyloid beta (Aβ) peptidesBerntsson, Elina; Vosough, Faraz; Svantesson, Teodor; Pansieri, Jonathan; Iashchishyn, Igor A.; Ostojić, Lucija; Dong, Xiaolin; Paul, Suman; Jarvet, Jüri; Roos, Per M.; Gräslund, Astrid; Wärmländer, Sebastian K.T.S.Scientific Reports2023 / art. 3341 https://doi.org/10.1038/s41598-023-29901-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
Related publications 1
- Interactions of metal ions with peptides and proteins related to Alzheimer's disease = Metallioonide interaktsioonid Alzheimeri tõvega seotud peptiidide ja valkudega
43

journal article EST / journal article ENG

Rethinking fish-friendliness of pumps by shifting focus to both safe and timely fish passage for effective conservationEvans, Oliver J.; Norman, Josh; Carter, Liam J.; Hutchinson, T.; Don, A.; Wright, Rosalind M.; Tuhtan, Jeffrey Andrew; Toming, Gert; Bolland, Jonathan D.Scientific reports2024 / art. 17888, 12 p. : ill https://doi.org/10.1038/s41598-024-67870-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
44

journal article EST / journal article ENG

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samplesBailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Kelso, Sean; Vijay Raghavan, KrishnaswamyNature Communications2020 / Art. nr. 4748 https://doi.org/10.1038/s41467-020-18151-y Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
45

journal article EST / journal article ENG

Sex differences in oncogenic mutational processesLi, Constance H.; Prokopec, Stephenie D.; Sun, Ren X.; Yousif, Fouad; Schmitz, Nathaniel; Al-Shahrour, Fatima; Atwal, Gurnit; Bailey, Peter J.; Biankin, Andrew V.; Uusküla-Reimand, LiisNature Communications2020 / Art. nr. 4330 https://doi.org/10.1038/s41467-020-17359-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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46

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Squeezing formaldehyde into C60 fullereneVyas, Vijyesh K.; Bacanu, George Razvan; Soundararajan, Murari; Marsden, Elizabeth S.; Jafari, Tanzeeha; Shugai, Anna; Light, Mark E.; Nagel, Urmas; Rõõm, Toomas; Levitt, Malcolm H.; Whitby, Richard J.Nature Communications2024 / art. 2515 https://doi.org/10.1038/s41467-024-46886-5 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
47

journal article EST / journal article ENG

Synergistic antibacterial effect of copper and silver nanoparticles and their mechanism of actionVasiliev, Grigory; Kubo, Anna-Liisa; Vija, Heiki; Kahru, Anne; Bondar, Denys; Karpichev, Yevgen; Bondarenko, OlesjaScientific reports2023 / art. 9202, 15 p. : ill https://doi.org/10.1038/s41598-023-36460-2 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG
Related publications 1
- Synergistic mechanisms and toxicity profiles of silver and copper nanoparticles for the development of novel antimicrobial materials = Vase ja hõbeda nanoosakeste sünergilise koosmõju mehhanismid ja rakendamine uute antimikroobsete materjalide arendamiseks
48

journal article EST / journal article ENG

Transfer of modified gut viromes improves symptoms associated with metabolic syndrome in obese male miceMao, Xiaotian; Larsen, Sabina Birgitte; Zachariassen, Line Sidsel Fisker; Brunse, Anders; Adamberg, Signe; Mejia, Josue Leonardo Castro; Larsen, Frej; Adamberg, Kaarel; Nielsen, Dennis Sandris; Hansen, Axel Kornerup; Hansen, Camilla Hartmann Friis; Rasmussen, Torben SølbeckNature communications2024 / art. 4704 https://doi.org/10.1038/s41467-024-49152-w Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

journal article EST / journal article ENG

Number of records 48, displaying 26 - 48

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