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A computational approach to study functional monomer‐protein molecular interactions to optimize protein molecular imprintingBoroznjak, Roman; Reut, Jekaterina; Tretjakov, Aleksei; Lomaka, Andre; Öpik, Andres; Sõritski, VitaliJournal of molecular recognition2017 / art. e2635, p. 1-9 : ill https://doi.org/10.1002/jmr.2635 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Copper chaperones. The concept of conformational control in the metabolism of copperPalumaa, PeepFEBS letters2013 / p. 1902-1910 : ill Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Correction to: Advancing drug–target interaction prediction: a comprehensive graph-based approach integrating knowledge graph embedding and ProtBert pretraining (BMC Bioinformatics, (2023), 24, 1, (488), 10.1186/s12859-023-05593-6)Djeddi, Warith Eddine; Hermi, Khalil; Ben Yahia, Sadok; Diallo, GayoBMC Bioinformatics2024 / art. 289 https://doi.org/10.1186/s12859-024-05905-4 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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A COST Action on microbial responses to low pH : developing links and sharing resources across the academic-industrial divideAzizi, Tamir; Carvalho De Araujo, Laurine; Cetecioglu, Zeynep; Clancy, Aisha J.; Feger, Marie L.; Liran, Oded; O’Byrne, Conor; Sanka, Immanuel; Scheler, Ott; Sedlakova-Kadukova, Jana; Ziv, Carmit; De Biase, Daniela; Lund, Peter A.New biotechnology2022 / p. 64-70 https://doi.org/10.1016/j.nbt.2022.09.002 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Cryo-protective effect of an ice-binding protein derived from Antarctic bacteriaMangiagalli, Marco; Bar-Dolev, Maya; Tedesco, Pietro; Natalello, Antonino; Kaleda, AlekseiThe FEBS journal2017 / p. 163-177 : ill https://doi.org/10.1111/febs.13965 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at Scopus

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Cytological characterization and allelism testing of anther developmental mutants identified in a screen of maize male sterile linesTimofejeva, Ljudmilla; Skibbe, David; Lee, SidaeG3 : genes, genomes, genetics2013 / p. 231-249 : ill https://doi.org/10.1534/g3.112.004465 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Cytosporone B as a biological preservative: purification, fungicidal activity and mechanism of action against geotrichum citri-aurantiiYin, Chunxiao; Liu, Hongxin; Shan, Yang; Gupta, Vijai Kumar; Jiang, Yueming; Zhang, Weimin; Tan, Haibo; Gong, LiangBiomolecules2019 / Art. nr. 125 https://doi.org/10.3390/biom9040125 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Determination of carcinoembryonic antigen as a tumor marker using a novel graphene-based label-free electrochemical immunosensorJozghorbani, Maryam; Fathi, Mojtaba; Kazemi, Sayed Habib; Alinejadian, NavidAnalytical biochemistry2021 / art. 114017 https://doi.org/10.1016/j.ab.2020.114017 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Differential susceptibility of catheter biomaterials to biofilm-associated infections and their remedy by drug-encapsulated eudragit RL100 nanoparticlesPandey, Vivek Kumar; Srivastava, Kumar Rohit; Ajmal, Gufran; Thakur, Vijay Kumar; Gupta, Vijai Kumar; Upadhyay, Siddh Nath; Mishra, Pradeep KumarInternational Journal of Molecular Sciences2019 / Art. nr. 5110 https://doi.org/10.3390/ijms20205110 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Distinct characteristics of the substrate binding between highly homologous catalase-related allene oxide synthase and hydroperoxide lyaseTeder, Tarvi; Samel, Nigulas; Lõhelaid, HelikeArchives of biochemistry and biophysics2019 / art. 108126, 10 p. : ill https://doi.org/10.1016/j.abb.2019.108126 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Diversity in TAF proteomics : consequences for cellular differentiation and migrationKazantseva, Jekaterina; Palm, KaiaInternational journal of molecular sciences2014 / p. 16680-16697 : ill https://doi.org/10.3390/ijms150916680 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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DOME : recommendations for supervised machine learning validation in biologyWalsh, Ian; Fishman, Dmytro; Garcia-Gasulla, Dario; Titma, Tiina; Pollastri, Gianluca; Harrow, Jennifer; Psomopoulos, Fotis E.; Tosatto, Silvio C. E.Nature methods2021 / p. 1122–1127 https://doi.org/10.1038/s41592-021-01205-4 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Author Correction : DOME : recommendations for supervised machine learning validation in biology

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Dual ELISA using SARS-CoV-2 N protein produced in E. coli and CHO cells reveals epitope masking by N-glycosylationRump, Airi; Risti, Robert; Kristal, Mai-Ly; Reut, Jekaterina; Sõritski, Vitali; Lõokene, Aivar; Rüütel Boudinot, SirjeBiochemical and biophysical research communications2021 / p. 457−460 https://doi.org/10.1016/j.bbrc.2020.11.060 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Effect of agitation on the peptide ﬁbrillization: Alzheimer’s amyloid- b peptide 1-42 but not amylin and insulin ﬁbrils can grow under quiescent conditionsTiiman, Ann; Noormägi, Andra; Friedemann, Merlin; Krištal, Jekaterina; Palumaa, Peep; Tõugu, VelloJournal of peptide science2013 / p. 386-391 : ill https://doi.org/10.1002/psc.2513 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Efficacy and epigenetic interactions of novel DNA hypomethylating agent guadecitabine (SGI-110) in preclinical models of hepatocellular carcinomaJueliger, Simone; Lyons, John; Cannito, Sara; Pata, Illar; Pata, Pille; Školnaja, MariannaEpigenetics2016 / p. 709-720 : ill https://doi.org/10.1080/15592294.2016.1214781 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Electrochemical functionalization of gold and silicon surfaces by a maleimide group as a biosensor for immunological applicationZhang, Xin; Tretjakov, Aleksei; Hovestädt, Marc; Sun, Guoguang; Sõritski, Vitali; Reut, Jekaterina; Volkmer, Rudolf; Hinrichs, Karsten; Rappich, JörgActa biomaterialia2013 / p. 5838-5844 : ill https://doi.org/10.1016/j.actbio.2012.10.022 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteinsValgepea, Kaspar; Adamberg, Kaarel; Seiman, Andrus; Vilu, RaivoMolecular biosystems2013 / p. 2344-2358 : ill https://doi.org/10.1039/c3mb70119k Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Evidence for two distinct binding sites for lipoprotein lipase on glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 (GPIHBP1)Reimund, Mart; Larsson, Mikael; Kovrov, Oleg; Kasvandik, Sergo; Olivecrona, Gunilla; Lõokene, AivarJournal of biological chemistry2015 / p. 13919-13934 : ill https://doi.org/10.1074/jbc.M114.634626 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Expression of alternative transcription factor 4 mRNAs and protein isoforms in the developing and adult rodent and human tissuesSirp, Alex; Shubina, Anastassia; Tuvikene, Jürgen; Tamberg, Laura; Kiir, Carl Sander; Kranich, Laura; Timmusk, TõnisFrontiers in Molecular Neuroscience2022 / art. 1033224 https://doi.org/10.3389/fnmol.2022.1033224 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Forkhead transcription factor FOXO3a levels are increased in Huntington disease because of overactivated positive autofeedback loopKannike, Kaja; Sepp, Mari; Zuccato, Chiara; Cattaneo, Elena; Timmusk, TõnisJournal of biological chemistry2014 / p. 32845-32857 : ill https://doi.org/10.1074/jbc.M114.612424 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Formulation of active food packaging by design: Linking composition of the film-forming solution to properties of the chitosan-based film by response surface methodology (RSM) modellingBajić, Marijan; Oberlintner, Ana; Kõrge, Kristi; Likozar, Blaž; Novak, UrošInternational Journal of Biological Macromolecules2020 / p. 971 - 978 https://doi.org/10.1016/j.ijbiomac.2020.05.186 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Functional consequences of TCF4 missense substitutions associated with Pitt-Hopkins syndrome, mild intellectual disability, and schizophreniaSirp, Alex; Roots, Kaisa; Nurm, Kaja; Tuvikene, Jürgen; Sepp, Mari; Timmusk, TõnisThe journal of biological chemistry2021 / art. 101381 https://doi.org/10.1016/j.jbc.2021.101381 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Related publications 1

Molecular characterization of basic helix-loop-helix transcription factor TCF4 : from expression to function = Aluselise heeliks-ling-heeliks transkriptsiooniteguri TCF4 ekspressiooni ja funktsiooni kirjeldamine

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A fungal catalase reacts selectively with the 13S fatty acid hydroperoxide products of the adjacent lipoxygenase gene and exhibits 13S-hydroperoxide-dependent peroxidase activityTeder, Tarvi; Boeglin, William E.; Schneider, Claus; Brash, Alan R.Biochimica et Biophysica Acta (BBA) - molecular and cell biology of lipids2017 / p. 706-715 : ill https://doi.org/10.1016/j.bbalip.2017.03.011 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Gene expression profiling of puberty-associated genes reveals abundant tissue and sex-specific changes across postnatal developmentHou, Huayun; Uusküla-Reimand, Liis; Makarem, Maisam; Corre, Christina; Saleh, Shems; Metcalf, Ariane; Goldenberg, Anna; Palmert, Mark R.; Wilson, Michael D.Human molecular genetics2017 / p. 3585-3599 : ill https://doi.org/10.1093/hmg/ddx246 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Genome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloidesReķena, Alina; Pinheiro, Marina J.; Bonturi, Nemailla; Belouah, Isma; Tammekivi, Eliise; Herodes, Koit; Kerkhoven, Eduard J.; Lahtvee, Petri-JaanPLoS computational biology2023 / art. e1011009 https://doi.org/10.1371/journal.pcbi.1011009 Journal metrics at Scopus Article at Scopus Journal metrics at WOS Article at WOS

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Biochemistry, genetics and molecular biology. Molecular biology (category)

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